Analysis of interatomic Contacts of Structural Units in PDB entry:
6APK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6APK entry

There is 1 chain in PDB entry 6APK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 6APK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 24Right-handed alpha
Helix 2
AA2
A
24 36Right-handed alpha
Helix 3
AA3
A
38 46Right-handed alpha
Helix 4
AA4
A
53 74Right-handed alpha
Helix 5
AA5
A
87 96Right-handed alpha
Helix 6
AA6
A
100 118Right-handed alpha
Helix 7
AA7
A
130 141Right-handed alpha
Helix 8
AA8
A
162 169Right-handed alpha
Helix 9
AA9
A
169 177Right-handed alpha
Helix 10
AB1
A
192 194Right-handed 310
Helix 11
AB2
A
195 206Right-handed alpha
Helix 12
AB3
A
207 209Right-handed 310
Helix 13
AB4
A
228 230Right-handed 310
Helix 14
AB5
A
231 239Right-handed alpha
Helix 15
AB6
A
240 242Right-handed 310
Helix 16
AB7
A
245 257Right-handed alpha
Helix 17
AB8
A
268 282Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6APK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 84first strand
Strand 2
A
2 6parallel
Strand 3
A
260 263parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 153first strand
Strand 2
A
156 161anti-parallel
Strand 3
A
122 127anti-parallel
Strand 4
A
180 183anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il