Analysis of interatomic Contacts of Structural Units in PDB entry:
6AQ3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AQ3 entry

There are 6 chains in PDB entry 6AQ3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 16	GLU 181
B	THR 11	GLU 181
C	ILE 15	GLU 181
D	PHE 12	GLU 181
E	LYS 14	PRO 184
F	ASN 13	GLU 181

There are 53 helices in PDB entry 6AQ3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	38	Right-handed alpha
Helix 2	AA2	A	40	68	Right-handed alpha
Helix 3	AA3	A	70	75	Right-handed 310
Helix 4	AA4	A	76	78	Right-handed 310
Helix 5	AA5	A	79	87	Right-handed alpha
Helix 6	AA6	A	87	94	Right-handed alpha
Helix 7	AA7	A	116	120	Right-handed 310
Helix 8	AA8	A	125	131	Right-handed alpha
Helix 9	AA9	A	137	149	Right-handed alpha
Helix 10	AB1	A	161	165	Right-handed 310
Helix 11	AB2	B	16	38	Right-handed alpha
Helix 12	AB3	B	40	67	Right-handed alpha
Helix 13	AB4	B	76	87	Right-handed alpha
Helix 14	AB5	B	87	94	Right-handed alpha
Helix 15	AB6	B	116	120	Right-handed 310
Helix 16	AB7	B	125	131	Right-handed alpha
Helix 17	AB8	B	137	150	Right-handed alpha
Helix 18	AB9	B	161	165	Right-handed 310
Helix 19	AC1	C	16	35	Right-handed alpha
Helix 20	AC2	C	40	68	Right-handed alpha
Helix 21	AC3	C	70	75	Right-handed 310
Helix 22	AC4	C	76	87	Right-handed alpha
Helix 23	AC5	C	87	94	Right-handed alpha
Helix 24	AC6	C	116	120	Right-handed 310
Helix 25	AC7	C	125	131	Right-handed alpha
Helix 26	AC8	C	137	150	Right-handed alpha
Helix 27	AC9	C	161	165	Right-handed 310
Helix 28	AD1	D	16	38	Right-handed alpha
Helix 29	AD2	D	40	67	Right-handed alpha
Helix 30	AD3	D	70	75	Right-handed 310
Helix 31	AD4	D	76	87	Right-handed alpha
Helix 32	AD5	D	87	94	Right-handed alpha
Helix 33	AD6	D	116	120	Right-handed 310
Helix 34	AD7	D	125	131	Right-handed alpha
Helix 35	AD8	D	137	150	Right-handed alpha
Helix 36	AD9	D	161	165	Right-handed 310
Helix 37	AE1	E	16	38	Right-handed alpha
Helix 38	AE2	E	40	67	Right-handed alpha
Helix 39	AE3	E	76	87	Right-handed alpha
Helix 40	AE4	E	87	94	Right-handed alpha
Helix 41	AE5	E	116	120	Right-handed 310
Helix 42	AE6	E	125	131	Right-handed alpha
Helix 43	AE7	E	137	150	Right-handed alpha
Helix 44	AE8	E	161	165	Right-handed 310
Helix 45	AE9	F	16	38	Right-handed alpha
Helix 46	AF1	F	40	68	Right-handed alpha
Helix 47	AF2	F	70	75	Right-handed 310
Helix 48	AF3	F	79	87	Right-handed alpha
Helix 49	AF4	F	87	94	Right-handed alpha
Helix 50	AF5	F	116	120	Right-handed 310
Helix 51	AF6	F	125	131	Right-handed alpha
Helix 52	AF7	F	137	150	Right-handed alpha
Helix 53	AF8	F	161	165	Right-handed 310

There are 6 sheets in PDB entry 6AQ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	108	113	anti-parallel
Strand 3	A	169	178	anti-parallel
Strand 4	A	152	160	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	108	113	anti-parallel
Strand 3	B	169	178	anti-parallel
Strand 4	B	152	160	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	108	113	anti-parallel
Strand 3	C	169	178	anti-parallel
Strand 4	C	152	160	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	100	first strand
Strand 2	D	108	113	anti-parallel
Strand 3	D	169	178	anti-parallel
Strand 4	D	152	160	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	100	first strand
Strand 2	E	108	113	anti-parallel
Strand 3	E	169	178	anti-parallel
Strand 4	E	152	160	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	100	first strand
Strand 2	F	108	113	anti-parallel
Strand 3	F	169	178	anti-parallel
Strand 4	F	152	160	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AQ3

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AQ3