Analysis of interatomic Contacts of Structural Units in PDB entry:
6AQH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AQH entry

There are 3 chains in PDB entry 6AQH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 11	VAL 497
B	PRO 9	LYS 498
C	LEU 11	LEU 329

There are 66 helices in PDB entry 6AQH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	28	Right-handed alpha
Helix 2	AA2	A	42	50	Right-handed alpha
Helix 3	AA3	A	97	101	Right-handed alpha
Helix 4	AA4	A	101	112	Right-handed alpha
Helix 5	AA5	A	157	164	Right-handed alpha
Helix 6	AA6	A	164	172	Right-handed alpha
Helix 7	AA7	A	172	195	Right-handed alpha
Helix 8	AA8	A	235	246	Right-handed alpha
Helix 9	AA9	A	281	301	Right-handed alpha
Helix 10	AB1	A	325	334	Right-handed alpha
Helix 11	AB2	A	342	353	Right-handed alpha
Helix 12	AB3	A	364	377	Right-handed alpha
Helix 13	AB4	A	378	381	Right-handed 310
Helix 14	AB5	A	429	446	Right-handed alpha
Helix 15	AB6	A	455	464	Right-handed alpha
Helix 16	AB7	A	476	485	Right-handed alpha
Helix 17	AB8	B	10	28	Right-handed alpha
Helix 18	AB9	B	42	50	Right-handed alpha
Helix 19	AC1	B	97	101	Right-handed alpha
Helix 20	AC2	B	101	112	Right-handed alpha
Helix 21	AC3	B	157	164	Right-handed alpha
Helix 22	AC4	B	164	172	Right-handed alpha
Helix 23	AC5	B	172	196	Right-handed alpha
Helix 24	AC6	B	235	246	Right-handed alpha
Helix 25	AC7	B	281	300	Right-handed alpha
Helix 26	AC8	B	325	334	Right-handed alpha
Helix 27	AC9	B	342	353	Right-handed alpha
Helix 28	AD1	B	364	377	Right-handed alpha
Helix 29	AD2	B	378	381	Right-handed 310
Helix 30	AD3	B	429	446	Right-handed alpha
Helix 31	AD4	B	455	464	Right-handed alpha
Helix 32	AD5	B	476	485	Right-handed alpha
Helix 33	AD6	C	12	28	Right-handed alpha
Helix 34	AD7	C	42	50	Right-handed alpha
Helix 35	AD8	C	97	101	Right-handed alpha
Helix 36	AD9	C	101	112	Right-handed alpha
Helix 37	AE1	C	157	164	Right-handed alpha
Helix 38	AE2	C	164	172	Right-handed alpha
Helix 39	AE3	C	172	195	Right-handed alpha
Helix 40	AE4	C	235	246	Right-handed alpha
Helix 41	AE5	C	281	301	Right-handed alpha
Helix 42	AE6	C	325	334	Right-handed alpha
Helix 43	AE7	C	342	353	Right-handed alpha
Helix 44	AE8	C	364	377	Right-handed alpha
Helix 45	AE9	C	378	381	Right-handed 310
Helix 46	AF1	C	393	395	Right-handed 310
Helix 47	AF2	C	429	445	Right-handed alpha
Helix 48	AF3	C	455	464	Right-handed alpha
Helix 49	AF4	C	476	485	Right-handed alpha
Helix 50	AF5	D	11	28	Right-handed alpha
Helix 51	AF6	D	42	50	Right-handed alpha
Helix 52	AF7	D	97	101	Right-handed alpha
Helix 53	AF8	D	101	112	Right-handed alpha
Helix 54	AF9	D	157	164	Right-handed alpha
Helix 55	AG1	D	164	172	Right-handed alpha
Helix 56	AG2	D	172	195	Right-handed alpha
Helix 57	AG3	D	235	246	Right-handed alpha
Helix 58	AG4	D	281	301	Right-handed alpha
Helix 59	AG5	D	325	334	Right-handed alpha
Helix 60	AG6	D	342	353	Right-handed alpha
Helix 61	AG7	D	364	377	Right-handed alpha
Helix 62	AG8	D	378	381	Right-handed 310
Helix 63	AG9	D	429	446	Right-handed alpha
Helix 64	AH1	D	455	463	Right-handed alpha
Helix 65	AH2	D	476	485	Right-handed alpha
Helix 66	AH3	D	488	492	Right-handed 310

There are 16 sheets in PDB entry 6AQH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	73	first strand
Strand 2	A	78	84	anti-parallel
Strand 3	A	90	96	anti-parallel
Strand 4	A	132	143	parallel
Strand 5	A	117	126	anti-parallel
Strand 6	A	57	73	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	200	first strand
Strand 2	A	249	257	parallel
Strand 3	A	269	278	anti-parallel
Strand 4	A	469	475	anti-parallel
Strand 5	A	419	425	anti-parallel
Strand 6	A	407	414	anti-parallel
Strand 7	A	385	391	anti-parallel
Strand 8	A	321	324	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	207	first strand
Strand 2	A	227	231	anti-parallel
Strand 3	A	219	222	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	307	first strand
Strand 2	A	313	315	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	74	first strand
Strand 2	B	78	84	anti-parallel
Strand 3	B	90	96	anti-parallel
Strand 4	B	132	143	parallel
Strand 5	B	117	126	anti-parallel
Strand 6	B	58	74	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	200	first strand
Strand 2	B	249	257	parallel
Strand 3	B	269	278	anti-parallel
Strand 4	B	469	475	anti-parallel
Strand 5	B	419	425	anti-parallel
Strand 6	B	407	414	anti-parallel
Strand 7	B	385	391	anti-parallel
Strand 8	B	321	324	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	207	first strand
Strand 2	B	227	231	anti-parallel
Strand 3	B	219	222	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	307	first strand
Strand 2	B	313	315	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	74	first strand
Strand 2	C	78	84	anti-parallel
Strand 3	C	90	96	anti-parallel
Strand 4	C	132	143	parallel
Strand 5	C	117	126	anti-parallel
Strand 6	C	58	74	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	200	first strand
Strand 2	C	249	257	parallel
Strand 3	C	269	278	anti-parallel
Strand 4	C	469	475	anti-parallel
Strand 5	C	418	425	anti-parallel
Strand 6	C	407	415	anti-parallel
Strand 7	C	385	391	anti-parallel
Strand 8	C	321	324	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	207	first strand
Strand 2	C	227	231	anti-parallel
Strand 3	C	219	222	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	307	first strand
Strand 2	C	313	315	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	73	first strand
Strand 2	D	78	84	anti-parallel
Strand 3	D	90	96	anti-parallel
Strand 4	D	132	143	parallel
Strand 5	D	117	126	anti-parallel
Strand 6	D	58	73	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	200	first strand
Strand 2	D	249	257	parallel
Strand 3	D	269	278	anti-parallel
Strand 4	D	469	475	anti-parallel
Strand 5	D	418	425	anti-parallel
Strand 6	D	407	415	anti-parallel
Strand 7	D	385	391	anti-parallel
Strand 8	D	321	324	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	207	first strand
Strand 2	D	227	231	anti-parallel
Strand 3	D	219	222	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	305	307	first strand
Strand 2	D	313	315	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AQH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AQH