Analysis of interatomic Contacts of Structural Units in PDB entry:
6AQR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AQR entry

There are 5 chains in PDB entry 6AQR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ASN 471
B
 THR 5THR 95
C
 THR 7SER 94
D
 MET 1GLY 76
E
 GLY 4GLU 95
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 6AQR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 11Right-handed alpha
Helix 2
AA2
A
13 33Right-handed alpha
Helix 3
AA3
A
35 44Right-handed alpha
Helix 4
AA4
A
72 82Right-handed alpha
Helix 5
AA5
A
106 111Right-handed alpha
Helix 6
AA6
A
112 116Right-handed 310
Helix 7
AA7
A
117 124Right-handed alpha
Helix 8
AA8
A
129 133Right-handed 310
Helix 9
AA9
A
145 157Right-handed alpha
Helix 10
AB1
A
158 167Right-handed alpha
Helix 11
AB2
A
168 174Right-handed alpha
Helix 12
AB3
A
182 196Right-handed alpha
Helix 13
AB4
A
213 227Right-handed alpha
Helix 14
AB5
A
228 231Right-handed 310
Helix 15
AB6
A
238 257Right-handed alpha
Helix 16
AB7
A
315 325Right-handed alpha
Helix 17
AB8
A
389 392Right-handed 310
Helix 18
AB9
A
435 437Right-handed 310
Helix 19
AC1
A
451 456Right-handed alpha
Helix 20
AC2
B
6 19Right-handed alpha
Helix 21
AC3
B
20 36Right-handed alpha
Helix 22
AC4
B
37 54Right-handed alpha
Helix 23
AC5
B
57 72Right-handed alpha
Helix 24
AC6
B
74 91Right-handed alpha
Helix 25
AC7
C
8 42Right-handed alpha
Helix 26
AC8
C
84 93Right-handed alpha
Helix 27
AC9
D
22 35Right-handed alpha
Helix 28
AD1
D
37 41Right-handed 310
Helix 29
AD2
D
55 60Right-handed 310
Helix 30
AD3
E
12 20Right-handed alpha
Helix 31
AD4
E
31 34Right-handed 310
Helix 32
AD5
E
35 41Right-handed alpha
Helix 33
AD6
E
50 58Right-handed alpha
Helix 34
AD7
E
89 94Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 6AQR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
57 60anti-parallel
Strand 3
A
85 88anti-parallel
Strand 4
A
94 96anti-parallel
Strand 5
A
101 102anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
E
75 78anti-parallel
Strand 3
E
84 86anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
D
74 75anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 303first strand
Strand 2
A
281 288anti-parallel
Strand 3
A
346 353anti-parallel
Strand 4
A
327 328anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 309first strand
Strand 2
A
357 363parallel
Strand 3
A
460 470anti-parallel
Strand 4
A
409 421anti-parallel
Strand 5
A
385 387anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 309first strand
Strand 2
A
357 363parallel
Strand 3
A
460 470anti-parallel
Strand 4
A
409 421anti-parallel
Strand 5
A
426 433anti-parallel
Strand 6
A
439 443anti-parallel
Strand 7
A
446 450anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 367first strand
Strand 2
A
373 375anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 94first strand
Strand 2
E
10 11anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 72first strand
Strand 2
C
79 81anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
2 6anti-parallel
Strand 3
D
66 70parallel
Strand 4
D
42 45anti-parallel
Strand 5
D
48 49anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il