Analysis of interatomic Contacts of Structural Units in PDB entry:
6AQY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AQY entry

There are 5 chains in PDB entry 6AQY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	LYS 333
B	ARG 4	LYS 333
C	GLN 3	LYS 333
D	GLU 5	LYS 333
E	MET 1	VAL 6

There are 87 helices in PDB entry 6AQY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	39	Right-handed alpha
Helix 2	AA2	A	49	53	Right-handed 310
Helix 3	AA3	A	57	69	Right-handed alpha
Helix 4	AA4	A	89	111	Right-handed alpha
Helix 5	AA5	A	121	125	Right-handed 310
Helix 6	AA6	A	134	138	Right-handed 310
Helix 7	AA7	A	144	146	Right-handed 310
Helix 8	AA8	A	147	171	Right-handed alpha
Helix 9	AA9	A	198	214	Right-handed alpha
Helix 10	AB1	A	232	246	Right-handed alpha
Helix 11	AB2	A	257	261	Right-handed 310
Helix 12	AB3	A	264	276	Right-handed alpha
Helix 13	AB4	A	298	305	Right-handed alpha
Helix 14	AB5	A	312	327	Right-handed alpha
Helix 15	AB6	A	328	331	Right-handed 310
Helix 16	AB7	B	26	39	Right-handed alpha
Helix 17	AB8	B	49	53	Right-handed 310
Helix 18	AB9	B	57	69	Right-handed alpha
Helix 19	AC1	B	90	111	Right-handed alpha
Helix 20	AC2	B	121	125	Right-handed 310
Helix 21	AC3	B	134	138	Right-handed 310
Helix 22	AC4	B	144	146	Right-handed 310
Helix 23	AC5	B	147	172	Right-handed alpha
Helix 24	AC6	B	198	214	Right-handed alpha
Helix 25	AC7	B	232	246	Right-handed alpha
Helix 26	AC8	B	257	261	Right-handed 310
Helix 27	AC9	B	264	276	Right-handed alpha
Helix 28	AD1	B	298	305	Right-handed alpha
Helix 29	AD2	B	312	327	Right-handed alpha
Helix 30	AD3	C	26	39	Right-handed alpha
Helix 31	AD4	C	49	53	Right-handed 310
Helix 32	AD5	C	57	69	Right-handed alpha
Helix 33	AD6	C	89	111	Right-handed alpha
Helix 34	AD7	C	121	125	Right-handed 310
Helix 35	AD8	C	134	138	Right-handed 310
Helix 36	AD9	C	144	146	Right-handed 310
Helix 37	AE1	C	147	171	Right-handed alpha
Helix 38	AE2	C	198	214	Right-handed alpha
Helix 39	AE3	C	232	246	Right-handed alpha
Helix 40	AE4	C	257	261	Right-handed 310
Helix 41	AE5	C	264	276	Right-handed alpha
Helix 42	AE6	C	298	305	Right-handed alpha
Helix 43	AE7	C	312	327	Right-handed alpha
Helix 44	AE8	D	26	39	Right-handed alpha
Helix 45	AE9	D	49	53	Right-handed 310
Helix 46	AF1	D	57	69	Right-handed alpha
Helix 47	AF2	D	89	111	Right-handed alpha
Helix 48	AF3	D	121	125	Right-handed 310
Helix 49	AF4	D	134	138	Right-handed 310
Helix 50	AF5	D	144	146	Right-handed 310
Helix 51	AF6	D	147	171	Right-handed alpha
Helix 52	AF7	D	198	214	Right-handed alpha
Helix 53	AF8	D	232	246	Right-handed alpha
Helix 54	AF9	D	257	261	Right-handed 310
Helix 55	AG1	D	264	276	Right-handed alpha
Helix 56	AG2	D	298	305	Right-handed alpha
Helix 57	AG3	D	312	327	Right-handed alpha
Helix 58	AG4	D	328	331	Right-handed 310
Helix 59	AG5	E	26	39	Right-handed alpha
Helix 60	AG6	E	49	53	Right-handed 310
Helix 61	AG7	E	57	69	Right-handed alpha
Helix 62	AG8	E	89	111	Right-handed alpha
Helix 63	AG9	E	121	125	Right-handed 310
Helix 64	AH1	E	134	140	Right-handed 310
Helix 65	AH2	E	147	171	Right-handed alpha
Helix 66	AH3	E	198	214	Right-handed alpha
Helix 67	AH4	E	232	246	Right-handed alpha
Helix 68	AH5	E	257	261	Right-handed 310
Helix 69	AH6	E	264	276	Right-handed alpha
Helix 70	AH7	E	298	305	Right-handed alpha
Helix 71	AH8	E	312	327	Right-handed alpha
Helix 72	AH9	E	328	331	Right-handed 310
Helix 73	AI1	F	26	39	Right-handed alpha
Helix 74	AI2	F	49	53	Right-handed 310
Helix 75	AI3	F	57	69	Right-handed alpha
Helix 76	AI4	F	89	111	Right-handed alpha
Helix 77	AI5	F	121	125	Right-handed 310
Helix 78	AI6	F	134	138	Right-handed 310
Helix 79	AI7	F	144	146	Right-handed 310
Helix 80	AI8	F	147	172	Right-handed alpha
Helix 81	AI9	F	198	212	Right-handed alpha
Helix 82	AJ1	F	232	246	Right-handed alpha
Helix 83	AJ2	F	257	261	Right-handed 310
Helix 84	AJ3	F	264	273	Right-handed alpha
Helix 85	AJ4	F	298	305	Right-handed alpha
Helix 86	AJ5	F	312	327	Right-handed alpha
Helix 87	AJ6	F	328	331	Right-handed 310

There are 24 sheets in PDB entry 6AQY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	47	first strand
Strand 2	A	18	22	parallel
Strand 3	A	72	75	parallel
Strand 4	A	115	119	parallel
Strand 5	A	176	182	parallel
Strand 6	A	252	254	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	186	first strand
Strand 2	A	230	231	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	219	first strand
Strand 2	A	281	283	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	262	263	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	47	first strand
Strand 2	B	18	22	parallel
Strand 3	B	72	75	parallel
Strand 4	B	115	119	parallel
Strand 5	B	176	182	parallel
Strand 6	B	252	254	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	186	first strand
Strand 2	B	230	231	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	220	first strand
Strand 2	B	281	284	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	227	first strand
Strand 2	B	262	263	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	47	first strand
Strand 2	C	18	22	parallel
Strand 3	C	72	75	parallel
Strand 4	C	115	119	parallel
Strand 5	C	176	182	parallel
Strand 6	C	252	254	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	186	first strand
Strand 2	C	230	231	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	220	first strand
Strand 2	C	281	284	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	227	first strand
Strand 2	C	262	263	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	47	first strand
Strand 2	D	18	22	parallel
Strand 3	D	72	75	parallel
Strand 4	D	115	119	parallel
Strand 5	D	176	182	parallel
Strand 6	D	252	254	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	186	first strand
Strand 2	D	230	231	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	219	first strand
Strand 2	D	281	283	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	227	first strand
Strand 2	D	262	263	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	47	first strand
Strand 2	E	18	22	parallel
Strand 3	E	72	75	parallel
Strand 4	E	115	119	parallel
Strand 5	E	176	182	parallel
Strand 6	E	252	254	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	185	186	first strand
Strand 2	E	230	231	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	217	220	first strand
Strand 2	E	281	284	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	226	227	first strand
Strand 2	E	262	263	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	47	first strand
Strand 2	F	18	22	parallel
Strand 3	F	72	75	parallel
Strand 4	F	115	119	parallel
Strand 5	F	176	182	parallel
Strand 6	F	252	254	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	185	186	first strand
Strand 2	F	230	231	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	219	220	first strand
Strand 2	F	283	284	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	226	227	first strand
Strand 2	F	262	263	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AQY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AQY