Analysis of interatomic Contacts of Structural Units in PDB entry:
6AQZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AQZ entry

There are 4 chains in PDB entry 6AQZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	LYS 333
B	ARG 4	LYS 333
C	HIS 0	LYS 333
D	MET 1	GLN 322

There are 91 helices in PDB entry 6AQZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	39	Right-handed alpha
Helix 2	AA2	A	49	53	Right-handed 310
Helix 3	AA3	A	57	69	Right-handed alpha
Helix 4	AA4	A	84	88	Right-handed 310
Helix 5	AA5	A	89	111	Right-handed alpha
Helix 6	AA6	A	121	125	Right-handed 310
Helix 7	AA7	A	134	138	Right-handed 310
Helix 8	AA8	A	144	146	Right-handed 310
Helix 9	AA9	A	147	172	Right-handed alpha
Helix 10	AB1	A	198	214	Right-handed alpha
Helix 11	AB2	A	232	246	Right-handed alpha
Helix 12	AB3	A	257	261	Right-handed 310
Helix 13	AB4	A	264	276	Right-handed alpha
Helix 14	AB5	A	298	305	Right-handed alpha
Helix 15	AB6	A	312	328	Right-handed alpha
Helix 16	AB7	A	329	331	Right-handed 310
Helix 17	AB8	B	26	39	Right-handed alpha
Helix 18	AB9	B	49	53	Right-handed 310
Helix 19	AC1	B	57	69	Right-handed alpha
Helix 20	AC2	B	89	111	Right-handed alpha
Helix 21	AC3	B	121	125	Right-handed 310
Helix 22	AC4	B	134	138	Right-handed 310
Helix 23	AC5	B	144	146	Right-handed 310
Helix 24	AC6	B	147	172	Right-handed alpha
Helix 25	AC7	B	198	213	Right-handed alpha
Helix 26	AC8	B	232	246	Right-handed alpha
Helix 27	AC9	B	257	261	Right-handed 310
Helix 28	AD1	B	264	273	Right-handed alpha
Helix 29	AD2	B	298	305	Right-handed alpha
Helix 30	AD3	B	312	327	Right-handed alpha
Helix 31	AD4	B	328	331	Right-handed 310
Helix 32	AD5	C	26	39	Right-handed alpha
Helix 33	AD6	C	49	53	Right-handed 310
Helix 34	AD7	C	57	69	Right-handed alpha
Helix 35	AD8	C	84	88	Right-handed 310
Helix 36	AD9	C	89	111	Right-handed alpha
Helix 37	AE1	C	121	125	Right-handed 310
Helix 38	AE2	C	134	138	Right-handed 310
Helix 39	AE3	C	144	146	Right-handed 310
Helix 40	AE4	C	147	172	Right-handed alpha
Helix 41	AE5	C	198	214	Right-handed alpha
Helix 42	AE6	C	232	246	Right-handed alpha
Helix 43	AE7	C	257	261	Right-handed 310
Helix 44	AE8	C	264	276	Right-handed alpha
Helix 45	AE9	C	298	305	Right-handed alpha
Helix 46	AF1	C	312	328	Right-handed alpha
Helix 47	AF2	C	329	331	Right-handed 310
Helix 48	AF3	D	26	39	Right-handed alpha
Helix 49	AF4	D	49	53	Right-handed 310
Helix 50	AF5	D	57	69	Right-handed alpha
Helix 51	AF6	D	89	111	Right-handed alpha
Helix 52	AF7	D	121	125	Right-handed 310
Helix 53	AF8	D	134	140	Right-handed 310
Helix 54	AF9	D	144	146	Right-handed 310
Helix 55	AG1	D	147	172	Right-handed alpha
Helix 56	AG2	D	198	214	Right-handed alpha
Helix 57	AG3	D	232	246	Right-handed alpha
Helix 58	AG4	D	257	261	Right-handed 310
Helix 59	AG5	D	264	276	Right-handed alpha
Helix 60	AG6	D	298	305	Right-handed alpha
Helix 61	AG7	D	312	327	Right-handed alpha
Helix 62	AG8	D	328	331	Right-handed 310
Helix 63	AG9	E	26	39	Right-handed alpha
Helix 64	AH1	E	49	53	Right-handed 310
Helix 65	AH2	E	57	69	Right-handed alpha
Helix 66	AH3	E	84	88	Right-handed 310
Helix 67	AH4	E	89	111	Right-handed alpha
Helix 68	AH5	E	121	125	Right-handed 310
Helix 69	AH6	E	134	138	Right-handed 310
Helix 70	AH7	E	144	146	Right-handed 310
Helix 71	AH8	E	147	171	Right-handed alpha
Helix 72	AH9	E	198	214	Right-handed alpha
Helix 73	AI1	E	232	246	Right-handed alpha
Helix 74	AI2	E	263	273	Right-handed alpha
Helix 75	AI3	E	298	305	Right-handed alpha
Helix 76	AI4	E	312	327	Right-handed alpha
Helix 77	AI5	E	328	331	Right-handed 310
Helix 78	AI6	F	26	39	Right-handed alpha
Helix 79	AI7	F	49	53	Right-handed 310
Helix 80	AI8	F	57	69	Right-handed alpha
Helix 81	AI9	F	90	111	Right-handed alpha
Helix 82	AJ1	F	121	125	Right-handed 310
Helix 83	AJ2	F	134	138	Right-handed 310
Helix 84	AJ3	F	144	146	Right-handed 310
Helix 85	AJ4	F	147	172	Right-handed alpha
Helix 86	AJ5	F	198	214	Right-handed alpha
Helix 87	AJ6	F	232	246	Right-handed alpha
Helix 88	AJ7	F	264	275	Right-handed alpha
Helix 89	AJ8	F	298	305	Right-handed alpha
Helix 90	AJ9	F	312	328	Right-handed alpha
Helix 91	AK1	F	329	331	Right-handed 310

There are 22 sheets in PDB entry 6AQZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	47	first strand
Strand 2	A	18	22	parallel
Strand 3	A	72	75	parallel
Strand 4	A	115	119	parallel
Strand 5	A	176	182	parallel
Strand 6	A	252	254	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	186	first strand
Strand 2	A	229	231	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	220	first strand
Strand 2	A	281	284	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	262	263	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	47	first strand
Strand 2	B	18	22	parallel
Strand 3	B	72	75	parallel
Strand 4	B	115	119	parallel
Strand 5	B	176	182	parallel
Strand 6	B	252	254	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	186	first strand
Strand 2	B	230	231	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	220	first strand
Strand 2	B	281	284	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	227	first strand
Strand 2	B	262	263	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	47	first strand
Strand 2	C	18	22	parallel
Strand 3	C	72	75	parallel
Strand 4	C	115	119	parallel
Strand 5	C	176	182	parallel
Strand 6	C	252	254	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	186	first strand
Strand 2	C	229	231	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	220	first strand
Strand 2	C	281	284	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	227	first strand
Strand 2	C	262	263	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	47	first strand
Strand 2	D	18	22	parallel
Strand 3	D	72	75	parallel
Strand 4	D	115	119	parallel
Strand 5	D	176	182	parallel
Strand 6	D	252	254	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	186	first strand
Strand 2	D	230	231	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	219	first strand
Strand 2	D	281	283	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	227	first strand
Strand 2	D	262	263	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	47	first strand
Strand 2	E	18	22	parallel
Strand 3	E	72	75	parallel
Strand 4	E	115	119	parallel
Strand 5	E	176	182	parallel
Strand 6	E	252	254	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	186	first strand
Strand 2	E	229	231	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	47	first strand
Strand 2	F	18	22	parallel
Strand 3	F	72	75	parallel
Strand 4	F	115	119	parallel
Strand 5	F	176	182	parallel
Strand 6	F	252	254	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	184	186	first strand
Strand 2	F	229	231	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	217	220	first strand
Strand 2	F	281	284	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	226	227	first strand
Strand 2	F	262	263	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AQZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AQZ