Analysis of interatomic Contacts of Structural Units in PDB entry:
6AS5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AS5 entry

There are 3 chains in PDB entry 6AS5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 11GLU 277
B
 LEU 11GLU 277
C
 LEU 11GLU 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 6AS5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 27Right-handed 310
Helix 2
AA2
A
28 36Right-handed alpha
Helix 3
AA3
A
48 50Right-handed 310
Helix 4
AA4
A
51 62Right-handed alpha
Helix 5
AA5
A
78 89Right-handed alpha
Helix 6
AA6
A
103 109Right-handed alpha
Helix 7
AA7
A
121 127Right-handed alpha
Helix 8
AA8
A
127 134Right-handed alpha
Helix 9
AA9
A
143 152Right-handed alpha
Helix 10
AB1
A
164 181Right-handed alpha
Helix 11
AB2
A
195 210Right-handed alpha
Helix 12
AB3
A
220 229Right-handed alpha
Helix 13
AB4
A
232 247Right-handed alpha
Helix 14
AB5
A
261 277Right-handed alpha
Helix 15
AB6
B
25 27Right-handed 310
Helix 16
AB7
B
28 36Right-handed alpha
Helix 17
AB8
B
48 50Right-handed 310
Helix 18
AB9
B
51 62Right-handed alpha
Helix 19
AC1
B
65 67Right-handed 310
Helix 20
AC2
B
78 89Right-handed alpha
Helix 21
AC3
B
103 109Right-handed alpha
Helix 22
AC4
B
121 127Right-handed alpha
Helix 23
AC5
B
127 134Right-handed alpha
Helix 24
AC6
B
143 152Right-handed alpha
Helix 25
AC7
B
164 181Right-handed alpha
Helix 26
AC8
B
195 210Right-handed alpha
Helix 27
AC9
B
218 220Right-handed 310
Helix 28
AD1
B
221 230Right-handed alpha
Helix 29
AD2
B
232 247Right-handed alpha
Helix 30
AD3
B
261 277Right-handed alpha
Helix 31
AD4
C
25 27Right-handed 310
Helix 32
AD5
C
28 36Right-handed alpha
Helix 33
AD6
C
48 50Right-handed 310
Helix 34
AD7
C
51 62Right-handed alpha
Helix 35
AD8
C
65 67Right-handed 310
Helix 36
AD9
C
78 89Right-handed alpha
Helix 37
AE1
C
103 109Right-handed alpha
Helix 38
AE2
C
121 127Right-handed alpha
Helix 39
AE3
C
127 134Right-handed alpha
Helix 40
AE4
C
143 152Right-handed alpha
Helix 41
AE5
C
164 181Right-handed alpha
Helix 42
AE6
C
195 210Right-handed alpha
Helix 43
AE7
C
218 220Right-handed 310
Helix 44
AE8
C
221 229Right-handed alpha
Helix 45
AE9
C
232 247Right-handed alpha
Helix 46
AF1
C
261 277Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6AS5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 22first strand
Strand 2
A
38 42parallel
Strand 3
A
69 72parallel
Strand 4
A
95 98parallel
Strand 5
A
114 119parallel
Strand 6
A
137 142parallel
Strand 7
A
184 187parallel
Strand 8
A
213 216parallel
Strand 9
A
17 22parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 255first strand
Strand 2
A
258 260anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 22first strand
Strand 2
B
38 42parallel
Strand 3
B
69 72parallel
Strand 4
B
95 98parallel
Strand 5
B
114 119parallel
Strand 6
B
137 142parallel
Strand 7
B
184 187parallel
Strand 8
B
213 216parallel
Strand 9
B
17 22parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 255first strand
Strand 2
B
258 260anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 22first strand
Strand 2
C
38 42parallel
Strand 3
C
69 72parallel
Strand 4
C
95 98parallel
Strand 5
C
114 119parallel
Strand 6
C
137 142parallel
Strand 7
C
184 187parallel
Strand 8
C
213 216parallel
Strand 9
C
17 22parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
253 255first strand
Strand 2
C
258 260anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il