Analysis of interatomic Contacts of Structural Units in PDB entry:
6AUJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AUJ entry

There are 6 chains in PDB entry 6AUJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 8PRO 153
A
 HIS 155ASN 259
B
 HIS 8PRO 153
B
 HIS 155GLY 265
C
 MET 9PRO 153
C
 HIS 155ASN 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 37 helices in PDB entry 6AUJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 23Right-handed alpha
Helix 2
AA2
A
47 49Right-handed 310
Helix 3
AA3
A
60 73Right-handed alpha
Helix 4
AA4
A
77 83Right-handed alpha
Helix 5
AA5
A
88 92Right-handed 310
Helix 6
AA6
A
101 108Right-handed alpha
Helix 7
AA7
A
118 130Right-handed alpha
Helix 8
AA8
A
142 149Right-handed 310
Helix 9
AA9
A
181 200Right-handed alpha
Helix 10
AB1
A
220 229Right-handed alpha
Helix 11
AB2
A
246 250Right-handed 310
Helix 12
AB3
A
251 253Right-handed 310
Helix 13
AB4
B
9 23Right-handed alpha
Helix 14
AB5
B
47 49Right-handed 310
Helix 15
AB6
B
60 73Right-handed alpha
Helix 16
AB7
B
77 83Right-handed alpha
Helix 17
AB8
B
88 92Right-handed 310
Helix 18
AB9
B
101 108Right-handed alpha
Helix 19
AC1
B
118 130Right-handed alpha
Helix 20
AC2
B
145 149Right-handed 310
Helix 21
AC3
B
181 200Right-handed alpha
Helix 22
AC4
B
220 229Right-handed alpha
Helix 23
AC5
B
246 250Right-handed 310
Helix 24
AC6
B
251 253Right-handed 310
Helix 25
AC7
C
10 23Right-handed alpha
Helix 26
AC8
C
47 49Right-handed 310
Helix 27
AC9
C
59 72Right-handed alpha
Helix 28
AD1
C
77 83Right-handed alpha
Helix 29
AD2
C
88 92Right-handed 310
Helix 30
AD3
C
101 108Right-handed alpha
Helix 31
AD4
C
112 114Right-handed 310
Helix 32
AD5
C
118 130Right-handed alpha
Helix 33
AD6
C
142 149Right-handed 310
Helix 34
AD7
C
181 200Right-handed alpha
Helix 35
AD8
C
220 230Right-handed alpha
Helix 36
AD9
C
246 250Right-handed 310
Helix 37
AE1
C
251 253Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 6AUJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
33 45anti-parallel
Strand 3
A
203 217anti-parallel
Strand 4
A
166 177parallel
Strand 5
A
155 163anti-parallel
Strand 6
A
136 139anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
116 117anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 240first strand
Strand 2
A
255 258anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 27first strand
Strand 2
B
33 45anti-parallel
Strand 3
B
203 217anti-parallel
Strand 4
B
166 177parallel
Strand 5
B
155 163anti-parallel
Strand 6
B
136 139anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 110first strand
Strand 2
B
116 117anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 240first strand
Strand 2
B
255 258anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 27first strand
Strand 2
C
33 45anti-parallel
Strand 3
C
203 217anti-parallel
Strand 4
C
166 177parallel
Strand 5
C
155 163anti-parallel
Strand 6
C
136 139anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
109 110first strand
Strand 2
C
116 117anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
237 240first strand
Strand 2
C
255 258anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il