Analysis of interatomic Contacts of Structural Units in PDB entry:
6AV9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AV9 entry

There are 12 chains in PDB entry 6AV9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 THR 5VAL 43
C
 VAL 45GLY 46
C
 GLY 48GLU 72
C
 GLY 74HIS 371
A
 THR 5VAL 43
A
 VAL 45GLY 46
A
 GLY 48GLU 72
A
 GLY 74HIS 371
B
 THR 5VAL 43
B
 VAL 45GLY 46
B
 GLY 48GLU 72
B
 GLY 74HIS 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 6AV9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
55 61Right-handed alpha
Helix 2
AA2
C
78 92Right-handed alpha
Helix 3
AA3
C
114 122Right-handed alpha
Helix 4
AA4
C
138 146Right-handed alpha
Helix 5
AA5
C
172 175Right-handed 310
Helix 6
AA6
C
181 194Right-handed alpha
Helix 7
AA7
C
195 197Right-handed 310
Helix 8
AA8
C
205 216Right-handed alpha
Helix 9
AA9
C
223 232Right-handed alpha
Helix 10
AB1
C
255 260Right-handed alpha
Helix 11
AB2
C
273 283Right-handed alpha
Helix 12
AB3
C
289 297Right-handed alpha
Helix 13
AB4
C
308 320Right-handed alpha
Helix 14
AB5
C
337 347Right-handed alpha
Helix 15
AB6
C
358 365Right-handed alpha
Helix 16
AB7
C
366 371Right-handed 310
Helix 17
AB8
A
55 61Right-handed alpha
Helix 18
AB9
A
78 92Right-handed alpha
Helix 19
AC1
A
114 122Right-handed alpha
Helix 20
AC2
A
138 146Right-handed alpha
Helix 21
AC3
A
172 175Right-handed 310
Helix 22
AC4
A
181 194Right-handed alpha
Helix 23
AC5
A
195 197Right-handed 310
Helix 24
AC6
A
205 216Right-handed alpha
Helix 25
AC7
A
223 232Right-handed alpha
Helix 26
AC8
A
255 260Right-handed alpha
Helix 27
AC9
A
273 283Right-handed alpha
Helix 28
AD1
A
289 297Right-handed alpha
Helix 29
AD2
A
308 320Right-handed alpha
Helix 30
AD3
A
337 347Right-handed alpha
Helix 31
AD4
A
358 365Right-handed alpha
Helix 32
AD5
A
366 371Right-handed 310
Helix 33
AD6
B
55 61Right-handed alpha
Helix 34
AD7
B
78 92Right-handed alpha
Helix 35
AD8
B
114 122Right-handed alpha
Helix 36
AD9
B
138 146Right-handed alpha
Helix 37
AE1
B
172 175Right-handed 310
Helix 38
AE2
B
181 194Right-handed alpha
Helix 39
AE3
B
195 197Right-handed 310
Helix 40
AE4
B
205 216Right-handed alpha
Helix 41
AE5
B
223 232Right-handed alpha
Helix 42
AE6
B
255 260Right-handed alpha
Helix 43
AE7
B
273 283Right-handed alpha
Helix 44
AE8
B
289 297Right-handed alpha
Helix 45
AE9
B
308 320Right-handed alpha
Helix 46
AF1
B
337 347Right-handed alpha
Helix 47
AF2
B
358 365Right-handed alpha
Helix 48
AF3
B
366 371Right-handed 310
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There are 12 sheets in PDB entry 6AV9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 32first strand
Strand 2
C
16 21anti-parallel
Strand 3
C
8 10anti-parallel
Strand 4
C
103 105parallel
Strand 5
C
133 134parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 54first strand
Strand 2
C
35 38anti-parallel
Strand 3
C
65 68anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 162first strand
Strand 2
C
176 178anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
165 166first strand
Strand 2
C
169 170anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
8 10anti-parallel
Strand 4
A
103 105parallel
Strand 5
A
133 134parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
35 38anti-parallel
Strand 3
A
65 68anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
176 178anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
169 170anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
16 21anti-parallel
Strand 3
B
8 10anti-parallel
Strand 4
B
103 105parallel
Strand 5
B
133 134parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
35 38anti-parallel
Strand 3
B
65 68anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
176 178anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
169 170anti-parallel
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