Analysis of interatomic Contacts of Structural Units in PDB entry:
6AVB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AVB entry

There are 12 chains in PDB entry 6AVB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	THR 5	VAL 43
C	VAL 45	GLY 46
C	GLY 48	GLU 72
C	GLY 74	HIS 371
A	THR 5	VAL 43
A	VAL 45	GLY 46
A	GLY 48	GLU 72
A	GLY 74	HIS 371
B	THR 5	VAL 43
B	VAL 45	GLY 46
B	GLY 48	GLU 72
B	GLY 74	HIS 371

There are 51 helices in PDB entry 6AVB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	55	61	Right-handed alpha
Helix 2	AA2	C	79	92	Right-handed alpha
Helix 3	AA3	C	114	123	Right-handed alpha
Helix 4	AA4	C	138	146	Right-handed alpha
Helix 5	AA5	C	172	175	Right-handed 310
Helix 6	AA6	C	181	194	Right-handed alpha
Helix 7	AA7	C	195	197	Right-handed 310
Helix 8	AA8	C	205	216	Right-handed alpha
Helix 9	AA9	C	224	232	Right-handed alpha
Helix 10	AB1	C	257	263	Right-handed 310
Helix 11	AB2	C	273	284	Right-handed alpha
Helix 12	AB3	C	289	297	Right-handed alpha
Helix 13	AB4	C	308	320	Right-handed alpha
Helix 14	AB5	C	337	347	Right-handed alpha
Helix 15	AB6	C	352	356	Right-handed 310
Helix 16	AB7	C	358	365	Right-handed alpha
Helix 17	AB8	C	366	371	Right-handed 310
Helix 18	AB9	A	55	61	Right-handed alpha
Helix 19	AC1	A	79	92	Right-handed alpha
Helix 20	AC2	A	114	123	Right-handed alpha
Helix 21	AC3	A	138	146	Right-handed alpha
Helix 22	AC4	A	172	175	Right-handed 310
Helix 23	AC5	A	181	194	Right-handed alpha
Helix 24	AC6	A	195	197	Right-handed 310
Helix 25	AC7	A	205	216	Right-handed alpha
Helix 26	AC8	A	224	232	Right-handed alpha
Helix 27	AC9	A	257	263	Right-handed 310
Helix 28	AD1	A	273	284	Right-handed alpha
Helix 29	AD2	A	289	297	Right-handed alpha
Helix 30	AD3	A	308	320	Right-handed alpha
Helix 31	AD4	A	337	347	Right-handed alpha
Helix 32	AD5	A	352	356	Right-handed 310
Helix 33	AD6	A	358	365	Right-handed alpha
Helix 34	AD7	A	366	371	Right-handed 310
Helix 35	AD8	B	55	61	Right-handed alpha
Helix 36	AD9	B	79	92	Right-handed alpha
Helix 37	AE1	B	114	123	Right-handed alpha
Helix 38	AE2	B	138	146	Right-handed alpha
Helix 39	AE3	B	172	175	Right-handed 310
Helix 40	AE4	B	181	194	Right-handed alpha
Helix 41	AE5	B	195	197	Right-handed 310
Helix 42	AE6	B	205	216	Right-handed alpha
Helix 43	AE7	B	224	232	Right-handed alpha
Helix 44	AE8	B	257	263	Right-handed 310
Helix 45	AE9	B	273	284	Right-handed alpha
Helix 46	AF1	B	289	297	Right-handed alpha
Helix 47	AF2	B	308	320	Right-handed alpha
Helix 48	AF3	B	337	347	Right-handed alpha
Helix 49	AF4	B	352	356	Right-handed 310
Helix 50	AF5	B	358	365	Right-handed alpha
Helix 51	AF6	B	366	371	Right-handed 310

There are 15 sheets in PDB entry 6AVB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	11	anti-parallel
Strand 4	C	103	105	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	151	first strand
Strand 2	C	164	166	anti-parallel
Strand 3	C	169	170	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	162	first strand
Strand 2	C	176	178	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	242	first strand
Strand 2	C	246	248	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	11	anti-parallel
Strand 4	A	103	105	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	151	first strand
Strand 2	A	164	166	anti-parallel
Strand 3	A	169	170	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	162	first strand
Strand 2	A	176	178	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	242	first strand
Strand 2	A	246	248	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	8	11	anti-parallel
Strand 4	B	103	105	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	151	first strand
Strand 2	B	164	166	anti-parallel
Strand 3	B	169	170	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	162	first strand
Strand 2	B	176	178	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	242	first strand
Strand 2	B	246	248	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AVB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AVB