Analysis of interatomic Contacts of Structural Units in PDB entry:
6AVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AVF entry

There are 5 chains in PDB entry 6AVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
M
 ILE 1ARG 97
A
 LEU 3SER 204
B
 VAL 2ASP 243
P
 ALA 1LEU 13
H
 GLY 1GLU 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6AVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
81 85Right-handed 310
Helix 2
AA2
A
186 191Right-handed alpha
Helix 3
AA3
B
82 86Right-handed 310
Helix 4
AA4
B
115 119Right-handed 310
Helix 5
AA5
B
130 138Right-handed alpha
Helix 6
AA6
B
197 201Right-handed alpha
Helix 7
AA7
P
4 8Right-handed 310
Helix 8
AA8
H
49 53Right-handed 310
Helix 9
AA9
H
56 85Right-handed alpha
Helix 10
AB1
H
137 151Right-handed alpha
Helix 11
AB2
H
151 162Right-handed alpha
Helix 12
AB3
H
162 175Right-handed alpha
Helix 13
AB4
H
175 180Right-handed alpha
Helix 14
AB5
H
253 257Right-handed 310
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There are 19 sheets in PDB entry 6AVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
6 11first strand
Strand 2
M
23 30anti-parallel
Strand 3
M
62 67anti-parallel
Strand 4
M
50 51anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
6 11first strand
Strand 2
M
23 30anti-parallel
Strand 3
M
62 67anti-parallel
Strand 4
M
55 56anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
44 45first strand
Strand 2
M
36 41anti-parallel
Strand 3
M
78 83anti-parallel
Strand 4
M
91 94anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 15first strand
Strand 2
A
108 113parallel
Strand 3
A
86 93anti-parallel
Strand 4
A
34 40anti-parallel
Strand 5
A
47 52anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 25first strand
Strand 2
A
72 77anti-parallel
Strand 3
A
63 65anti-parallel
Strand 4
A
57 58anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
99 100anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 127first strand
Strand 2
A
135 140anti-parallel
Strand 3
A
171 180anti-parallel
Strand 4
A
156 158anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 127first strand
Strand 2
A
135 140anti-parallel
Strand 3
A
171 180anti-parallel
Strand 4
A
162 166anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
23 25anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
108 113parallel
Strand 3
B
87 95anti-parallel
Strand 4
B
31 38anti-parallel
Strand 5
B
42 49anti-parallel
Strand 6
B
56 57anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
108 113parallel
Strand 3
B
87 95anti-parallel
Strand 4
B
98 104anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 21first strand
Strand 2
B
73 78anti-parallel
Strand 3
B
64 70anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 127first strand
Strand 2
B
139 149anti-parallel
Strand 3
B
187 196anti-parallel
Strand 4
B
169 171anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 127first strand
Strand 2
B
139 149anti-parallel
Strand 3
B
187 196anti-parallel
Strand 4
B
176 177anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 165first strand
Strand 2
B
154 160anti-parallel
Strand 3
B
206 213anti-parallel
Strand 4
B
232 239anti-parallel
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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
46 47first strand
Strand 2
H
31 37anti-parallel
Strand 3
H
21 28anti-parallel
Strand 4
H
3 12anti-parallel
Strand 5
H
94 103anti-parallel
Strand 6
H
109 118anti-parallel
Strand 7
H
121 126anti-parallel
Strand 8
H
133 135anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
186 193first strand
Strand 2
H
198 208anti-parallel
Strand 3
H
241 250anti-parallel
Strand 4
H
228 230anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
186 193first strand
Strand 2
H
198 208anti-parallel
Strand 3
H
241 250anti-parallel
Strand 4
H
234 235anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
214 218first strand
Strand 2
H
258 262anti-parallel
Strand 3
H
270 272anti-parallel
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