Analysis of interatomic Contacts of Structural Units in PDB entry:
6AVG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AVG entry

There are 10 chains in PDB entry 6AVG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	ILE 1	MET 99
C	ALA 5	SER 200
D	MET 3	ASP 247
G	GLY 1	TRP 274
A	ILE 1	MET 99
B	ALA 5	SER 200
E	MET 3	ASP 247
F	GLY 1	GLU 275
Q	ALA 1	LEU 13
P	ALA 1	LEU 13

There are 26 helices in PDB entry 6AVG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	82	86	Right-handed 310
Helix 2	AA2	C	163	166	Right-handed 310
Helix 3	AA3	C	182	186	Right-handed 310
Helix 4	AA4	D	85	89	Right-handed 310
Helix 5	AA5	D	134	142	Right-handed alpha
Helix 6	AA6	D	201	206	Right-handed alpha
Helix 7	AA7	G	49	53	Right-handed 310
Helix 8	AA8	G	56	85	Right-handed alpha
Helix 9	AA9	G	137	151	Right-handed alpha
Helix 10	AB1	G	151	162	Right-handed alpha
Helix 11	AB2	G	162	175	Right-handed alpha
Helix 12	AB3	G	175	180	Right-handed alpha
Helix 13	AB4	G	253	255	Right-handed 310
Helix 14	AB5	B	82	86	Right-handed 310
Helix 15	AB6	B	163	166	Right-handed 310
Helix 16	AB7	B	182	186	Right-handed 310
Helix 17	AB8	E	85	89	Right-handed 310
Helix 18	AB9	E	134	142	Right-handed alpha
Helix 19	AC1	E	201	206	Right-handed alpha
Helix 20	AC2	F	49	53	Right-handed 310
Helix 21	AC3	F	56	85	Right-handed alpha
Helix 22	AC4	F	137	150	Right-handed alpha
Helix 23	AC5	F	151	162	Right-handed alpha
Helix 24	AC6	F	162	175	Right-handed alpha
Helix 25	AC7	F	175	180	Right-handed alpha
Helix 26	AC8	F	253	255	Right-handed 310

There are 34 sheets in PDB entry 6AVG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	11	first strand
Strand 2	H	21	30	anti-parallel
Strand 3	H	62	70	anti-parallel
Strand 4	H	50	51	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	11	first strand
Strand 2	H	21	30	anti-parallel
Strand 3	H	62	70	anti-parallel
Strand 4	H	55	56	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	45	first strand
Strand 2	H	36	41	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	91	94	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	16	first strand
Strand 2	C	104	109	parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	35	41	anti-parallel
Strand 5	C	48	53	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	26	first strand
Strand 2	C	73	78	anti-parallel
Strand 3	C	64	66	anti-parallel
Strand 4	C	58	59	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	131	136	anti-parallel
Strand 3	C	167	176	anti-parallel
Strand 4	C	153	154	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	131	136	anti-parallel
Strand 3	C	167	176	anti-parallel
Strand 4	C	158	162	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	10	first strand
Strand 2	D	22	27	anti-parallel
Strand 3	D	77	81	anti-parallel
Strand 4	D	67	71	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	17	first strand
Strand 2	D	112	117	parallel
Strand 3	D	90	97	anti-parallel
Strand 4	D	34	40	anti-parallel
Strand 5	D	47	53	anti-parallel
Strand 6	D	56	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	17	first strand
Strand 2	D	112	117	parallel
Strand 3	D	90	97	anti-parallel
Strand 4	D	107	108	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	131	first strand
Strand 2	D	143	153	anti-parallel
Strand 3	D	191	200	anti-parallel
Strand 4	D	173	175	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	131	first strand
Strand 2	D	143	153	anti-parallel
Strand 3	D	191	200	anti-parallel
Strand 4	D	180	181	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	169	first strand
Strand 2	D	158	164	anti-parallel
Strand 3	D	210	217	anti-parallel
Strand 4	D	236	243	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	47	first strand
Strand 2	G	31	37	anti-parallel
Strand 3	G	21	28	anti-parallel
Strand 4	G	3	12	anti-parallel
Strand 5	G	94	103	anti-parallel
Strand 6	G	109	118	anti-parallel
Strand 7	G	121	126	anti-parallel
Strand 8	G	133	135	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	186	193	first strand
Strand 2	G	199	208	anti-parallel
Strand 3	G	241	249	anti-parallel
Strand 4	G	228	230	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	186	193	first strand
Strand 2	G	199	208	anti-parallel
Strand 3	G	241	249	anti-parallel
Strand 4	G	234	235	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	222	223	first strand
Strand 2	G	214	219	anti-parallel
Strand 3	G	257	262	anti-parallel
Strand 4	G	270	272	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	11	first strand
Strand 2	A	21	30	anti-parallel
Strand 3	A	62	70	anti-parallel
Strand 4	A	50	51	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	11	first strand
Strand 2	A	21	30	anti-parallel
Strand 3	A	62	70	anti-parallel
Strand 4	A	55	56	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	36	41	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	91	94	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	16	first strand
Strand 2	B	104	109	parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	35	41	anti-parallel
Strand 5	B	48	53	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	26	first strand
Strand 2	B	73	78	anti-parallel
Strand 3	B	64	66	anti-parallel
Strand 4	B	58	59	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	122	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	167	176	anti-parallel
Strand 4	B	152	154	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	122	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	167	176	anti-parallel
Strand 4	B	158	162	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	10	first strand
Strand 2	E	22	27	anti-parallel
Strand 3	E	77	81	anti-parallel
Strand 4	E	67	71	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	17	first strand
Strand 2	E	112	117	parallel
Strand 3	E	90	97	anti-parallel
Strand 4	E	34	40	anti-parallel
Strand 5	E	47	53	anti-parallel
Strand 6	E	56	60	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	17	first strand
Strand 2	E	112	117	parallel
Strand 3	E	90	97	anti-parallel
Strand 4	E	107	108	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	131	first strand
Strand 2	E	143	153	anti-parallel
Strand 3	E	191	200	anti-parallel
Strand 4	E	173	175	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	131	first strand
Strand 2	E	143	153	anti-parallel
Strand 3	E	191	200	anti-parallel
Strand 4	E	180	181	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	169	first strand
Strand 2	E	158	164	anti-parallel
Strand 3	E	210	217	anti-parallel
Strand 4	E	236	243	anti-parallel

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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	47	first strand
Strand 2	F	31	37	anti-parallel
Strand 3	F	21	28	anti-parallel
Strand 4	F	3	12	anti-parallel
Strand 5	F	94	103	anti-parallel
Strand 6	F	109	118	anti-parallel
Strand 7	F	121	126	anti-parallel
Strand 8	F	133	135	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	186	193	first strand
Strand 2	F	198	208	anti-parallel
Strand 3	F	241	250	anti-parallel
Strand 4	F	228	230	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	186	193	first strand
Strand 2	F	198	208	anti-parallel
Strand 3	F	241	250	anti-parallel
Strand 4	F	234	235	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	222	223	first strand
Strand 2	F	214	219	anti-parallel
Strand 3	F	257	262	anti-parallel
Strand 4	F	270	272	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AVG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AVG