Analysis of interatomic Contacts of Structural Units in PDB entry:
6AVH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AVH entry

There are 3 chains in PDB entry 6AVH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 6	TRP 586
B	PRO 7	TRP 586
C	PRO 3	ILE 188

There are104 helices in PDB entry 6AVH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	21	Right-handed alpha
Helix 2	AA2	A	23	39	Right-handed alpha
Helix 3	AA3	A	42	49	Right-handed alpha
Helix 4	AA4	A	54	62	Right-handed alpha
Helix 5	AA5	A	66	79	Right-handed alpha
Helix 6	AA6	A	82	86	Right-handed 310
Helix 7	AA7	A	111	133	Right-handed alpha
Helix 8	AA8	A	135	139	Right-handed 310
Helix 9	AA9	A	161	168	Right-handed alpha
Helix 10	AB1	A	185	190	Right-handed alpha
Helix 11	AB2	A	193	208	Right-handed alpha
Helix 12	AB3	A	220	244	Right-handed alpha
Helix 13	AB4	A	252	259	Right-handed alpha
Helix 14	AB5	A	259	264	Right-handed alpha
Helix 15	AB6	A	267	280	Right-handed alpha
Helix 16	AB7	A	285	291	Right-handed alpha
Helix 17	AB8	A	302	307	Right-handed 310
Helix 18	AB9	A	308	317	Right-handed alpha
Helix 19	AC1	A	342	346	Right-handed 310
Helix 20	AC2	A	441	453	Right-handed alpha
Helix 21	AC3	A	454	458	Right-handed 310
Helix 22	AC4	A	496	511	Right-handed alpha
Helix 23	AC5	A	512	521	Right-handed alpha
Helix 24	AC6	A	536	547	Right-handed alpha
Helix 25	AC7	A	563	573	Right-handed alpha
Helix 26	AC8	B	17	23	Right-handed alpha
Helix 27	AC9	B	23	40	Right-handed alpha
Helix 28	AD1	B	42	49	Right-handed alpha
Helix 29	AD2	B	54	62	Right-handed alpha
Helix 30	AD3	B	66	79	Right-handed alpha
Helix 31	AD4	B	82	86	Right-handed 310
Helix 32	AD5	B	111	124	Right-handed alpha
Helix 33	AD6	B	126	133	Right-handed alpha
Helix 34	AD7	B	135	139	Right-handed 310
Helix 35	AD8	B	161	168	Right-handed alpha
Helix 36	AD9	B	185	190	Right-handed alpha
Helix 37	AE1	B	193	208	Right-handed alpha
Helix 38	AE2	B	220	243	Right-handed alpha
Helix 39	AE3	B	252	259	Right-handed alpha
Helix 40	AE4	B	259	264	Right-handed alpha
Helix 41	AE5	B	267	279	Right-handed alpha
Helix 42	AE6	B	285	291	Right-handed alpha
Helix 43	AE7	B	302	307	Right-handed 310
Helix 44	AE8	B	308	317	Right-handed alpha
Helix 45	AE9	B	342	346	Right-handed 310
Helix 46	AF1	B	383	385	Right-handed 310
Helix 47	AF2	B	441	453	Right-handed alpha
Helix 48	AF3	B	454	458	Right-handed 310
Helix 49	AF4	B	496	511	Right-handed alpha
Helix 50	AF5	B	512	521	Right-handed alpha
Helix 51	AF6	B	536	547	Right-handed alpha
Helix 52	AF7	B	563	573	Right-handed alpha
Helix 53	AF8	C	11	14	Right-handed 310
Helix 54	AF9	C	15	23	Right-handed alpha
Helix 55	AG1	C	23	39	Right-handed alpha
Helix 56	AG2	C	42	48	Right-handed alpha
Helix 57	AG3	C	54	62	Right-handed alpha
Helix 58	AG4	C	66	79	Right-handed alpha
Helix 59	AG5	C	82	86	Right-handed 310
Helix 60	AG6	C	111	133	Right-handed alpha
Helix 61	AG7	C	135	139	Right-handed 310
Helix 62	AG8	C	161	168	Right-handed alpha
Helix 63	AG9	C	185	190	Right-handed alpha
Helix 64	AH1	C	193	207	Right-handed alpha
Helix 65	AH2	C	208	210	Right-handed 310
Helix 66	AH3	C	220	244	Right-handed alpha
Helix 67	AH4	C	252	259	Right-handed alpha
Helix 68	AH5	C	259	264	Right-handed alpha
Helix 69	AH6	C	267	280	Right-handed alpha
Helix 70	AH7	C	285	291	Right-handed alpha
Helix 71	AH8	C	302	307	Right-handed 310
Helix 72	AH9	C	308	317	Right-handed alpha
Helix 73	AI1	C	342	346	Right-handed 310
Helix 74	AI2	C	352	355	Right-handed 310
Helix 75	AI3	C	440	453	Right-handed alpha
Helix 76	AI4	C	454	456	Right-handed 310
Helix 77	AI5	C	496	510	Right-handed alpha
Helix 78	AI6	C	512	521	Right-handed alpha
Helix 79	AI7	C	536	548	Right-handed alpha
Helix 80	AI8	C	563	573	Right-handed alpha
Helix 81	AI9	D	13	23	Right-handed alpha
Helix 82	AJ1	D	23	39	Right-handed alpha
Helix 83	AJ2	D	42	49	Right-handed alpha
Helix 84	AJ3	D	54	62	Right-handed alpha
Helix 85	AJ4	D	66	79	Right-handed alpha
Helix 86	AJ5	D	82	86	Right-handed 310
Helix 87	AJ6	D	112	133	Right-handed alpha
Helix 88	AJ7	D	135	139	Right-handed 310
Helix 89	AJ8	D	161	168	Right-handed alpha
Helix 90	AJ9	D	185	190	Right-handed alpha
Helix 91	AK1	D	193	208	Right-handed alpha
Helix 92	AK2	D	220	244	Right-handed alpha
Helix 93	AK3	D	252	259	Right-handed alpha
Helix 94	AK4	D	259	264	Right-handed alpha
Helix 95	AK5	D	267	278	Right-handed alpha
Helix 96	AK6	D	285	291	Right-handed alpha
Helix 97	AK7	D	302	307	Right-handed 310
Helix 98	AK8	D	308	317	Right-handed alpha
Helix 99	AK9	D	383	385	Right-handed 310
Helix 100	AL1	D	440	452	Right-handed alpha
Helix 101	AL2	D	496	511	Right-handed alpha
Helix 102	AL3	D	512	521	Right-handed alpha
Helix 103	AL4	D	536	547	Right-handed alpha
Helix 104	AL5	D	563	573	Right-handed alpha

There are 22 sheets in PDB entry 6AVH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	110	first strand
Strand 2	A	93	95	anti-parallel
Strand 3	A	158	160	parallel
Strand 4	A	151	152	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	143	first strand
Strand 2	A	212	219	parallel
Strand 3	A	297	300	parallel
Strand 4	A	321	322	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	327	first strand
Strand 2	A	332	335	anti-parallel
Strand 3	A	348	350	anti-parallel
Strand 4	A	419	427	anti-parallel
Strand 5	A	408	416	anti-parallel
Strand 6	A	390	396	anti-parallel
Strand 7	A	356	361	anti-parallel
Strand 8	A	379	381	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	327	first strand
Strand 2	A	332	335	anti-parallel
Strand 3	A	348	350	anti-parallel
Strand 4	A	419	427	anti-parallel
Strand 5	A	408	416	anti-parallel
Strand 6	A	390	396	anti-parallel
Strand 7	A	404	405	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	432	first strand
Strand 2	A	439	440	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	460	470	first strand
Strand 2	A	477	486	anti-parallel
Strand 3	A	529	533	parallel
Strand 4	A	574	579	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	110	first strand
Strand 2	B	93	95	anti-parallel
Strand 3	B	158	160	parallel
Strand 4	B	151	152	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	143	first strand
Strand 2	B	212	219	parallel
Strand 3	B	296	300	parallel
Strand 4	B	321	322	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	327	first strand
Strand 2	B	332	335	anti-parallel
Strand 3	B	348	350	anti-parallel
Strand 4	B	419	426	anti-parallel
Strand 5	B	409	416	anti-parallel
Strand 6	B	390	396	anti-parallel
Strand 7	B	356	361	anti-parallel
Strand 8	B	380	381	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	327	first strand
Strand 2	B	332	335	anti-parallel
Strand 3	B	348	350	anti-parallel
Strand 4	B	419	426	anti-parallel
Strand 5	B	409	416	anti-parallel
Strand 6	B	390	396	anti-parallel
Strand 7	B	404	405	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	432	first strand
Strand 2	B	439	440	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	460	470	first strand
Strand 2	B	477	486	anti-parallel
Strand 3	B	529	533	parallel
Strand 4	B	574	579	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	110	first strand
Strand 2	C	93	100	anti-parallel
Strand 3	C	158	160	parallel
Strand 4	C	151	152	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	143	first strand
Strand 2	C	212	219	parallel
Strand 3	C	296	300	parallel
Strand 4	C	321	322	parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	327	first strand
Strand 2	C	332	335	anti-parallel
Strand 3	C	348	350	anti-parallel
Strand 4	C	419	427	anti-parallel
Strand 5	C	408	416	anti-parallel
Strand 6	C	390	396	anti-parallel
Strand 7	C	356	361	anti-parallel
Strand 8	C	379	381	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	327	first strand
Strand 2	C	332	335	anti-parallel
Strand 3	C	348	350	anti-parallel
Strand 4	C	419	427	anti-parallel
Strand 5	C	408	416	anti-parallel
Strand 6	C	390	396	anti-parallel
Strand 7	C	404	405	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	462	470	first strand
Strand 2	C	477	484	anti-parallel
Strand 3	C	529	533	parallel
Strand 4	C	574	579	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	111	first strand
Strand 2	D	91	96	anti-parallel
Strand 3	D	158	160	parallel
Strand 4	D	151	152	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	143	first strand
Strand 2	D	212	219	parallel
Strand 3	D	296	300	parallel
Strand 4	D	321	322	parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	325	327	first strand
Strand 2	D	332	335	anti-parallel
Strand 3	D	348	350	anti-parallel
Strand 4	D	419	427	anti-parallel
Strand 5	D	408	416	anti-parallel
Strand 6	D	390	396	anti-parallel
Strand 7	D	356	361	anti-parallel
Strand 8	D	379	381	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	325	327	first strand
Strand 2	D	332	335	anti-parallel
Strand 3	D	348	350	anti-parallel
Strand 4	D	419	427	anti-parallel
Strand 5	D	408	416	anti-parallel
Strand 6	D	390	396	anti-parallel
Strand 7	D	404	405	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	461	470	first strand
Strand 2	D	477	485	anti-parallel
Strand 3	D	529	533	parallel
Strand 4	D	574	579	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AVH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AVH