Analysis of interatomic Contacts of Structural Units in PDB entry:
6AVR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AVR entry

There are 4 chains in PDB entry 6AVR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	TRP 953
B	GLY 1	PRO 685
H	GLU 1	ARG 217
L	LEU 2	GLU 213

There are 39 helices in PDB entry 6AVR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	175	180	Right-handed alpha
Helix 2	AA2	A	188	194	Right-handed alpha
Helix 3	AA3	A	214	218	Right-handed 310
Helix 4	AA4	A	427	429	Right-handed 310
Helix 5	AA5	A	565	569	Right-handed 310
Helix 6	AA6	A	768	772	Right-handed 310
Helix 7	AA7	A	905	908	Right-handed 310
Helix 8	AA8	B	4	9	Right-handed alpha
Helix 9	AA9	B	12	20	Right-handed alpha
Helix 10	AB1	B	40	47	Right-handed alpha
Helix 11	AB2	B	121	123	Right-handed 310
Helix 12	AB3	B	124	131	Right-handed alpha
Helix 13	AB4	B	132	134	Right-handed 310
Helix 14	AB5	B	135	143	Right-handed alpha
Helix 15	AB6	B	170	174	Right-handed 310
Helix 16	AB7	B	177	181	Right-handed 310
Helix 17	AB8	B	200	209	Right-handed alpha
Helix 18	AB9	B	221	232	Right-handed alpha
Helix 19	AC1	B	232	237	Right-handed alpha
Helix 20	AC2	B	258	264	Right-handed 310
Helix 21	AC3	B	281	286	Right-handed 310
Helix 22	AC4	B	291	302	Right-handed alpha
Helix 23	AC5	B	314	324	Right-handed alpha
Helix 24	AC6	B	339	352	Right-handed alpha
Helix 25	AC7	B	435	440	Right-handed alpha
Helix 26	AC8	B	487	491	Right-handed 310
Helix 27	AC9	B	534	538	Right-handed 310
Helix 28	AD1	B	573	578	Right-handed 310
Helix 29	AD2	B	607	619	Right-handed alpha
Helix 30	AD3	B	623	628	Right-handed alpha
Helix 31	AD4	B	630	635	Right-handed alpha
Helix 32	AD5	H	28	32	Right-handed 310
Helix 33	AD6	H	87	91	Right-handed 310
Helix 34	AD7	H	160	162	Right-handed 310
Helix 35	AD8	H	190	192	Right-handed 310
Helix 36	AD9	H	204	207	Right-handed 310
Helix 37	AE1	L	79	83	Right-handed 310
Helix 38	AE2	L	121	127	Right-handed alpha
Helix 39	AE3	L	183	187	Right-handed alpha

There are 39 sheets in PDB entry 6AVR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	431	435	anti-parallel
Strand 3	A	422	426	anti-parallel
Strand 4	A	408	410	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	A	55	60	anti-parallel
Strand 4	A	67	69	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	113	116	anti-parallel
Strand 3	A	119	124	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	104	109	anti-parallel
Strand 3	A	127	132	anti-parallel
Strand 4	A	135	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	163	first strand
Strand 2	A	168	172	anti-parallel
Strand 3	A	183	187	anti-parallel
Strand 4	A	208	209	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	229	first strand
Strand 2	A	238	243	anti-parallel
Strand 3	A	252	257	anti-parallel
Strand 4	A	260	268	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	283	first strand
Strand 2	A	292	297	anti-parallel
Strand 3	A	314	319	anti-parallel
Strand 4	A	327	332	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	303	first strand
Strand 2	A	309	311	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	348	first strand
Strand 2	A	357	362	anti-parallel
Strand 3	A	372	375	anti-parallel
Strand 4	A	389	392	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	379	first strand
Strand 2	A	382	383	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	462	first strand
Strand 2	A	469	483	anti-parallel
Strand 3	A	534	542	anti-parallel
Strand 4	A	511	513	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	462	first strand
Strand 2	A	469	483	anti-parallel
Strand 3	A	440	449	anti-parallel
Strand 4	A	577	578	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	454	first strand
Strand 2	A	585	592	parallel
Strand 3	A	555	563	anti-parallel
Strand 4	A	490	499	anti-parallel
Strand 5	A	520	528	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	612	first strand
Strand 2	A	623	633	anti-parallel
Strand 3	A	693	701	anti-parallel
Strand 4	A	651	656	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	616	618	first strand
Strand 2	A	730	737	parallel
Strand 3	A	710	718	anti-parallel
Strand 4	A	642	646	anti-parallel
Strand 5	A	678	682	anti-parallel
Strand 6	A	668	671	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	742	748	first strand
Strand 2	A	775	784	anti-parallel
Strand 3	A	894	903	anti-parallel
Strand 4	A	809	816	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	752	754	first strand
Strand 2	A	941	952	parallel
Strand 3	A	918	930	anti-parallel
Strand 4	A	792	803	anti-parallel
Strand 5	A	878	886	anti-parallel
Strand 6	A	820	824	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	806	807	first strand
Strand 2	A	792	803	anti-parallel
Strand 3	A	918	930	anti-parallel
Strand 4	A	871	872	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	65	first strand
Strand 2	B	87	92	anti-parallel
Strand 3	B	425	431	parallel
Strand 4	B	412	418	anti-parallel
Strand 5	B	355	360	anti-parallel
Strand 6	B	385	386	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	105	first strand
Strand 2	B	394	403	anti-parallel
Strand 3	B	366	375	anti-parallel
Strand 4	B	378	381	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	197	first strand
Strand 2	B	149	158	anti-parallel
Strand 3	B	112	119	parallel
Strand 4	B	243	250	parallel
Strand 5	B	304	311	parallel
Strand 6	B	329	333	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	456	first strand
Strand 2	B	459	461	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	500	502	first strand
Strand 2	B	505	507	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	516	517	first strand
Strand 2	B	523	524	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	540	543	first strand
Strand 2	B	546	549	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	553	554	first strand
Strand 2	B	560	561	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	580	582	first strand
Strand 2	B	585	587	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	638	642	first strand
Strand 2	B	676	682	parallel
Strand 3	B	664	673	anti-parallel
Strand 4	B	652	658	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	69	73	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	111	115	parallel
Strand 3	H	92	100	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	111	115	parallel
Strand 3	H	92	100	anti-parallel
Strand 4	H	103	107	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	178	188	anti-parallel
Strand 4	H	167	169	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	178	188	anti-parallel
Strand 4	H	173	175	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	158	first strand
Strand 2	H	198	203	anti-parallel
Strand 3	H	208	213	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	155	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	205	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AVR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AVR