Analysis of interatomic Contacts of Structural Units in PDB entry:
6AVW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AVW entry

There is 1 chain in PDB entry 6AVW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LYS 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6AVW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 20Right-handed alpha
Helix 2
AA2
A
21 26Right-handed 310
Helix 3
AA3
A
47 50Right-handed 310
Helix 4
AA4
A
72 92Right-handed alpha
Helix 5
AA5
A
96 98Right-handed 310
Helix 6
AA6
A
106 118Right-handed alpha
Helix 7
AA7
A
136 143Right-handed 310
Helix 8
AA8
A
145 150Right-handed 310
Helix 9
AA9
A
164 170Right-handed alpha
Helix 10
AB1
A
170 179Right-handed alpha
Helix 11
AB2
A
195 211Right-handed alpha
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There are 2 sheets in PDB entry 6AVW. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
5 9parallel
Strand 3
A
100 105parallel
Strand 4
A
125 129parallel
Strand 5
A
152 157parallel
Strand 6
A
182 187parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
53 55anti-parallel
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