Analysis of interatomic Contacts of Structural Units in PDB entry:
6AVY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AVY entry

There are 2 chains in PDB entry 6AVY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 19GLY 249
B
 GLU 18GLY 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6AVY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 53Right-handed alpha
Helix 2
AA2
A
73 76Right-handed 310
Helix 3
AA3
A
96 112Right-handed alpha
Helix 4
AA4
A
126 142Right-handed alpha
Helix 5
AA5
A
169 175Right-handed alpha
Helix 6
AA6
A
177 187Right-handed alpha
Helix 7
AA7
A
201 215Right-handed alpha
Helix 8
AA8
A
233 248Right-handed alpha
Helix 9
AA9
B
44 53Right-handed alpha
Helix 10
AB1
B
73 76Right-handed 310
Helix 11
AB2
B
96 112Right-handed alpha
Helix 12
AB3
B
126 142Right-handed alpha
Helix 13
AB4
B
166 168Right-handed 310
Helix 14
AB5
B
169 175Right-handed alpha
Helix 15
AB6
B
177 187Right-handed alpha
Helix 16
AB7
B
201 215Right-handed alpha
Helix 17
AB8
B
233 249Right-handed alpha
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There are 4 sheets in PDB entry 6AVY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 25first strand
Strand 2
A
60 64anti-parallel
Strand 3
A
33 38parallel
Strand 4
A
119 125parallel
Strand 5
A
156 160parallel
Strand 6
A
189 194parallel
Strand 7
A
220 225parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
79 81anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 25first strand
Strand 2
B
60 64anti-parallel
Strand 3
B
33 38parallel
Strand 4
B
119 125parallel
Strand 5
B
156 160parallel
Strand 6
B
189 194parallel
Strand 7
B
220 225parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 71first strand
Strand 2
B
79 81anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il