Analysis of interatomic Contacts of Structural Units in PDB entry:
6AWF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AWF entry

There are 5 chains in PDB entry 6AWF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 0	ALA 576
B	ALA 1	LYS 241
C	THR 1	TRP 130
D	MET 0	ILE 118
E	MET 0	THR 234

There are 88 helices in PDB entry 6AWF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	27	Right-handed alpha
Helix 2	AA2	A	39	48	Right-handed 310
Helix 3	AA3	A	61	73	Right-handed alpha
Helix 4	AA4	A	78	99	Right-handed alpha
Helix 5	AA5	A	130	144	Right-handed alpha
Helix 6	AA6	A	195	199	Right-handed 310
Helix 7	AA7	A	210	219	Right-handed alpha
Helix 8	AA8	A	244	248	Right-handed 310
Helix 9	AA9	A	261	267	Right-handed 310
Helix 10	AB1	A	281	285	Right-handed 310
Helix 11	AB2	A	286	301	Right-handed alpha
Helix 12	AB3	A	316	319	Right-handed 310
Helix 13	AB4	A	320	328	Right-handed alpha
Helix 14	AB5	A	328	339	Right-handed alpha
Helix 15	AB6	A	393	415	Right-handed alpha
Helix 16	AB7	A	421	442	Right-handed alpha
Helix 17	AB8	A	447	463	Right-handed alpha
Helix 18	AB9	A	468	487	Right-handed alpha
Helix 19	AC1	A	499	525	Right-handed alpha
Helix 20	AC2	B	35	47	Right-handed alpha
Helix 21	AC3	B	77	79	Right-handed 310
Helix 22	AC4	B	80	84	Right-handed 310
Helix 23	AC5	B	106	116	Right-handed alpha
Helix 24	AC6	B	126	130	Right-handed 310
Helix 25	AC7	B	135	141	Right-handed alpha
Helix 26	AC8	B	142	147	Right-handed 310
Helix 27	AC9	B	152	158	Right-handed alpha
Helix 28	AD1	B	158	164	Right-handed alpha
Helix 29	AD2	B	169	181	Right-handed alpha
Helix 30	AD3	B	187	196	Right-handed alpha
Helix 31	AD4	B	200	204	Right-handed 310
Helix 32	AD5	B	208	214	Right-handed alpha
Helix 33	AD6	B	219	241	Right-handed alpha
Helix 34	AD7	C	14	18	Right-handed 310
Helix 35	AD8	C	19	31	Right-handed alpha
Helix 36	AD9	C	31	51	Right-handed alpha
Helix 37	AE1	C	51	64	Right-handed alpha
Helix 38	AE2	C	66	90	Right-handed alpha
Helix 39	AE3	C	91	94	Right-handed 310
Helix 40	AE4	C	105	127	Right-handed alpha
Helix 41	AE5	D	9	27	Right-handed alpha
Helix 42	AE6	D	27	37	Right-handed alpha
Helix 43	AE7	D	38	42	Right-handed 310
Helix 44	AE8	D	50	59	Right-handed alpha
Helix 45	AE9	D	60	90	Right-handed alpha
Helix 46	AF1	D	95	115	Right-handed alpha
Helix 47	AF2	E	13	27	Right-handed alpha
Helix 48	AF3	E	39	48	Right-handed 310
Helix 49	AF4	E	61	73	Right-handed alpha
Helix 50	AF5	E	80	98	Right-handed alpha
Helix 51	AF6	E	130	144	Right-handed alpha
Helix 52	AF7	E	195	199	Right-handed 310
Helix 53	AF8	E	210	218	Right-handed alpha
Helix 54	AF9	E	288	293	Right-handed alpha
Helix 55	AG1	E	333	339	Right-handed alpha
Helix 56	AG2	E	394	416	Right-handed alpha
Helix 57	AG3	E	421	441	Right-handed alpha
Helix 58	AG4	E	447	463	Right-handed alpha
Helix 59	AG5	E	468	487	Right-handed alpha
Helix 60	AG6	E	499	525	Right-handed alpha
Helix 61	AG7	E	543	548	Right-handed alpha
Helix 62	AG8	F	35	47	Right-handed alpha
Helix 63	AG9	F	77	79	Right-handed 310
Helix 64	AH1	F	80	84	Right-handed 310
Helix 65	AH2	F	106	116	Right-handed alpha
Helix 66	AH3	F	126	130	Right-handed 310
Helix 67	AH4	F	135	141	Right-handed alpha
Helix 68	AH5	F	143	147	Right-handed 310
Helix 69	AH6	F	152	158	Right-handed alpha
Helix 70	AH7	F	158	164	Right-handed alpha
Helix 71	AH8	F	169	181	Right-handed alpha
Helix 72	AH9	F	187	196	Right-handed alpha
Helix 73	AI1	F	200	204	Right-handed 310
Helix 74	AI2	F	208	214	Right-handed alpha
Helix 75	AI3	F	219	240	Right-handed alpha
Helix 76	AI4	G	14	18	Right-handed 310
Helix 77	AI5	G	19	31	Right-handed alpha
Helix 78	AI6	G	31	49	Right-handed alpha
Helix 79	AI7	G	51	63	Right-handed alpha
Helix 80	AI8	G	66	90	Right-handed alpha
Helix 81	AI9	G	91	94	Right-handed 310
Helix 82	AJ1	G	105	129	Right-handed alpha
Helix 83	AJ2	H	9	27	Right-handed alpha
Helix 84	AJ3	H	27	37	Right-handed alpha
Helix 85	AJ4	H	38	42	Right-handed 310
Helix 86	AJ5	H	50	60	Right-handed alpha
Helix 87	AJ6	H	60	90	Right-handed alpha
Helix 88	AJ7	H	95	115	Right-handed alpha

There are 15 sheets in PDB entry 6AWF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1	4	first strand
Strand 2	A	179	184	parallel
Strand 3	A	166	174	anti-parallel
Strand 4	A	155	163	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	153	first strand
Strand 2	A	32	36	parallel
Strand 3	A	7	10	parallel
Strand 4	A	188	190	parallel
Strand 5	A	374	376	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	124	125	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	382	first strand
Strand 2	A	360	362	parallel
Strand 3	A	223	224	anti-parallel
Strand 4	A	549	555	anti-parallel
Strand 5	A	561	567	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	235	first strand
Strand 2	A	348	357	anti-parallel
Strand 3	A	312	315	anti-parallel
Strand 4	A	253	255	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	467	first strand
Strand 2	A	533	534	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	30	first strand
Strand 2	B	4	12	anti-parallel
Strand 3	B	89	92	parallel
Strand 4	B	66	69	anti-parallel
Strand 5	B	72	75	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	103	104	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1	2	first strand
Strand 2	E	180	184	parallel
Strand 3	E	166	174	anti-parallel
Strand 4	E	155	163	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	150	first strand
Strand 2	E	32	35	parallel
Strand 3	E	7	10	parallel
Strand 4	E	188	190	parallel
Strand 5	E	374	376	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	53	first strand
Strand 2	E	124	125	anti-parallel
Strand 3	E	113	114	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	381	382	first strand
Strand 2	E	360	362	parallel
Strand 3	E	223	224	anti-parallel
Strand 4	E	549	555	anti-parallel
Strand 5	E	561	567	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	229	232	first strand
Strand 2	E	353	357	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	25	30	first strand
Strand 2	F	4	10	anti-parallel
Strand 3	F	89	91	parallel
Strand 4	F	66	69	anti-parallel
Strand 5	F	72	75	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	100	first strand
Strand 2	F	103	104	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AWF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AWF