Analysis of interatomic Contacts of Structural Units in PDB entry:
6AXE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AXE entry

There are 2 chains in PDB entry 6AXE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	GLY 730
B	THR 2	ASP 580

There are 64 helices in PDB entry 6AXE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	23	Right-handed alpha
Helix 2	AA2	A	31	70	Right-handed alpha
Helix 3	AA3	A	77	88	Right-handed alpha
Helix 4	AA4	A	106	111	Right-handed alpha
Helix 5	AA5	A	123	132	Right-handed alpha
Helix 6	AA6	A	138	144	Right-handed alpha
Helix 7	AA7	A	161	180	Right-handed alpha
Helix 8	AA8	A	186	190	Right-handed 310
Helix 9	AA9	A	213	215	Right-handed 310
Helix 10	AB1	A	249	253	Right-handed 310
Helix 11	AB2	A	280	297	Right-handed alpha
Helix 12	AB3	A	364	377	Right-handed alpha
Helix 13	AB4	A	378	381	Right-handed 310
Helix 14	AB5	A	406	425	Right-handed alpha
Helix 15	AB6	A	439	444	Right-handed alpha
Helix 16	AB7	A	445	453	Right-handed alpha
Helix 17	AB8	A	463	475	Right-handed alpha
Helix 18	AB9	A	476	479	Right-handed 310
Helix 19	AC1	A	483	489	Right-handed 310
Helix 20	AC2	A	490	507	Right-handed alpha
Helix 21	AC3	A	525	533	Right-handed alpha
Helix 22	AC4	A	534	539	Right-handed alpha
Helix 23	AC5	A	548	562	Right-handed alpha
Helix 24	AC6	A	563	572	Right-handed alpha
Helix 25	AC7	A	578	583	Right-handed alpha
Helix 26	AC8	A	594	620	Right-handed alpha
Helix 27	AC9	A	637	654	Right-handed alpha
Helix 28	AD1	A	658	677	Right-handed alpha
Helix 29	AD2	A	689	692	Right-handed 310
Helix 30	AD3	A	693	705	Right-handed alpha
Helix 31	AD4	A	706	713	Right-handed 310
Helix 32	AD5	A	714	730	Right-handed alpha
Helix 33	AD6	B	14	23	Right-handed alpha
Helix 34	AD7	B	31	71	Right-handed alpha
Helix 35	AD8	B	77	88	Right-handed alpha
Helix 36	AD9	B	106	111	Right-handed alpha
Helix 37	AE1	B	123	132	Right-handed alpha
Helix 38	AE2	B	138	145	Right-handed alpha
Helix 39	AE3	B	161	180	Right-handed alpha
Helix 40	AE4	B	186	190	Right-handed 310
Helix 41	AE5	B	213	215	Right-handed 310
Helix 42	AE6	B	247	253	Right-handed alpha
Helix 43	AE7	B	280	297	Right-handed alpha
Helix 44	AE8	B	364	377	Right-handed alpha
Helix 45	AE9	B	378	381	Right-handed 310
Helix 46	AF1	B	406	425	Right-handed alpha
Helix 47	AF2	B	439	444	Right-handed alpha
Helix 48	AF3	B	445	453	Right-handed alpha
Helix 49	AF4	B	463	475	Right-handed alpha
Helix 50	AF5	B	476	479	Right-handed 310
Helix 51	AF6	B	483	489	Right-handed 310
Helix 52	AF7	B	490	507	Right-handed alpha
Helix 53	AF8	B	525	533	Right-handed alpha
Helix 54	AF9	B	534	539	Right-handed alpha
Helix 55	AG1	B	548	562	Right-handed alpha
Helix 56	AG2	B	563	572	Right-handed alpha
Helix 57	AG3	B	578	583	Right-handed alpha
Helix 58	AG4	B	594	620	Right-handed alpha
Helix 59	AG5	B	637	654	Right-handed alpha
Helix 60	AG6	B	658	677	Right-handed alpha
Helix 61	AG7	B	689	692	Right-handed 310
Helix 62	AG8	B	693	705	Right-handed alpha
Helix 63	AG9	B	706	713	Right-handed 310
Helix 64	AH1	B	714	729	Right-handed alpha

There are 14 sheets in PDB entry 6AXE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	10	13	anti-parallel
Strand 3	A	346	352	anti-parallel
Strand 4	A	360	363	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	120	first strand
Strand 2	A	267	271	parallel
Strand 3	A	335	339	parallel
Strand 4	A	397	401	parallel
Strand 5	A	431	437	parallel
Strand 6	A	457	462	parallel
Strand 7	A	514	517	parallel
Strand 8	A	543	546	parallel
Strand 9	A	116	120	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	137	first strand
Strand 2	A	257	263	anti-parallel
Strand 3	A	237	243	anti-parallel
Strand 4	A	227	234	anti-parallel
Strand 5	A	217	222	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	196	first strand
Strand 2	A	199	203	anti-parallel
Strand 3	A	208	209	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	303	first strand
Strand 2	A	310	312	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	321	first strand
Strand 2	A	327	330	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	624	627	first strand
Strand 2	A	633	636	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	10	13	anti-parallel
Strand 3	B	346	352	anti-parallel
Strand 4	B	360	363	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	120	first strand
Strand 2	B	267	271	parallel
Strand 3	B	335	339	parallel
Strand 4	B	397	401	parallel
Strand 5	B	431	437	parallel
Strand 6	B	457	462	parallel
Strand 7	B	514	517	parallel
Strand 8	B	543	546	parallel
Strand 9	B	114	120	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	137	first strand
Strand 2	B	257	263	anti-parallel
Strand 3	B	237	243	anti-parallel
Strand 4	B	227	234	anti-parallel
Strand 5	B	217	222	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	196	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	208	209	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	305	first strand
Strand 2	B	308	313	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	321	first strand
Strand 2	B	327	330	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	626	627	first strand
Strand 2	B	633	634	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AXE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AXE