Analysis of interatomic Contacts of Structural Units in PDB entry:
6AY2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AY2 entry

There are 2 chains in PDB entry 6AY2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 0ASP 254
B
 LEU 1ASP 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6AY2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 11Right-handed alpha
Helix 2
AA2
A
14 19Right-handed 310
Helix 3
AA3
A
28 46Right-handed alpha
Helix 4
AA4
A
55 63Right-handed alpha
Helix 5
AA5
A
64 67Right-handed 310
Helix 6
AA6
A
69 73Right-handed 310
Helix 7
AA7
A
75 86Right-handed alpha
Helix 8
AA8
A
140 144Right-handed 310
Helix 9
AA9
A
156 168Right-handed alpha
Helix 10
AB1
A
179 183Right-handed 310
Helix 11
AB2
A
238 242Right-handed 310
Helix 12
AB3
B
7 11Right-handed alpha
Helix 13
AB4
B
14 19Right-handed 310
Helix 14
AB5
B
28 46Right-handed alpha
Helix 15
AB6
B
55 63Right-handed alpha
Helix 16
AB7
B
64 67Right-handed 310
Helix 17
AB8
B
69 73Right-handed 310
Helix 18
AB9
B
75 86Right-handed alpha
Helix 19
AC1
B
156 168Right-handed alpha
Helix 20
AC2
B
179 183Right-handed 310
Helix 21
AC3
B
238 242Right-handed 310
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There are 6 sheets in PDB entry 6AY2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
195 209anti-parallel
Strand 3
A
170 177anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
195 209anti-parallel
Strand 3
A
212 218anti-parallel
Strand 4
A
230 234anti-parallel
Strand 5
A
187 188parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
247 248anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
195 209anti-parallel
Strand 3
B
170 177anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
195 209anti-parallel
Strand 3
B
212 218anti-parallel
Strand 4
B
230 234anti-parallel
Strand 5
B
187 188parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 152first strand
Strand 2
B
247 248anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il