Analysis of interatomic Contacts of Structural Units in PDB entry:
6AY4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AY4 entry

There is 1 chain in PDB entry 6AY4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 35GLN 484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6AY4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 56Right-handed alpha
Helix 2
AA2
A
56 69Right-handed alpha
Helix 3
AA3
A
86 89Right-handed 310
Helix 4
AA4
A
90 96Right-handed alpha
Helix 5
AA5
A
107 109Right-handed 310
Helix 6
AA6
A
110 115Right-handed alpha
Helix 7
AA7
A
118 122Right-handed 310
Helix 8
AA8
A
124 136Right-handed alpha
Helix 9
AA9
A
140 163Right-handed alpha
Helix 10
AB1
A
170 188Right-handed alpha
Helix 11
AB2
A
191 198Right-handed alpha
Helix 12
AB3
A
199 209Right-handed alpha
Helix 13
AB4
A
213 217Right-handed 310
Helix 14
AB5
A
223 251Right-handed alpha
Helix 15
AB6
A
252 257Right-handed 310
Helix 16
AB7
A
262 269Right-handed alpha
Helix 17
AB8
A
279 310Right-handed alpha
Helix 18
AB9
A
312 328Right-handed alpha
Helix 19
AC1
A
334 340Right-handed alpha
Helix 20
AC2
A
341 355Right-handed alpha
Helix 21
AC3
A
385 390Right-handed alpha
Helix 22
AC4
A
404 409Right-handed alpha
Helix 23
AC5
A
411 415Right-handed 310
Helix 24
AC6
A
425 429Right-handed 310
Helix 25
AC7
A
432 450Right-handed alpha
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There are 3 sheets in PDB entry 6AY4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 76first strand
Strand 2
A
79 84anti-parallel
Strand 3
A
381 384parallel
Strand 4
A
361 365anti-parallel
Strand 5
A
101 102anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 169first strand
Strand 2
A
476 481anti-parallel
Strand 3
A
451 455anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 371first strand
Strand 2
A
374 376anti-parallel
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