Analysis of interatomic Contacts of Structural Units in PDB entry:
6AY6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AY6 entry

There are 2 chains in PDB entry 6AY6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 35ARG 391
A
 THR 393LYS 483
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6AY6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 56Right-handed alpha
Helix 2
AA2
A
56 69Right-handed alpha
Helix 3
AA3
A
86 89Right-handed 310
Helix 4
AA4
A
90 95Right-handed alpha
Helix 5
AA5
A
107 109Right-handed 310
Helix 6
AA6
A
110 115Right-handed alpha
Helix 7
AA7
A
118 122Right-handed 310
Helix 8
AA8
A
124 137Right-handed alpha
Helix 9
AA9
A
140 161Right-handed alpha
Helix 10
AB1
A
170 188Right-handed alpha
Helix 11
AB2
A
191 197Right-handed alpha
Helix 12
AB3
A
199 210Right-handed alpha
Helix 13
AB4
A
213 217Right-handed 310
Helix 14
AB5
A
223 251Right-handed alpha
Helix 15
AB6
A
252 256Right-handed 310
Helix 16
AB7
A
262 270Right-handed alpha
Helix 17
AB8
A
279 311Right-handed alpha
Helix 18
AB9
A
312 328Right-handed alpha
Helix 19
AC1
A
334 341Right-handed alpha
Helix 20
AC2
A
341 355Right-handed alpha
Helix 21
AC3
A
385 391Right-handed alpha
Helix 22
AC4
A
404 409Right-handed alpha
Helix 23
AC5
A
411 415Right-handed 310
Helix 24
AC6
A
425 429Right-handed 310
Helix 25
AC7
A
432 451Right-handed alpha
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There are 4 sheets in PDB entry 6AY6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
71 76parallel
Strand 3
A
79 84anti-parallel
Strand 4
A
381 384parallel
Strand 5
A
361 365anti-parallel
Strand 6
A
101 102anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 169first strand
Strand 2
A
476 480anti-parallel
Strand 3
A
452 455anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 371first strand
Strand 2
A
374 376anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 463first strand
Strand 2
A
470 471anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il