Analysis of interatomic Contacts of Structural Units in PDB entry:
6AYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AYR entry

There are 4 chains in PDB entry 6AYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0LEU 228
B
 GLY 0LEU 228
C
 GLY 0LEU 228
D
 GLY 0LEU 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 6AYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 21Right-handed alpha
Helix 2
AA2
A
51 65Right-handed alpha
Helix 3
AA3
A
102 106Right-handed 310
Helix 4
AA4
A
122 136Right-handed alpha
Helix 5
AA5
A
154 166Right-handed alpha
Helix 6
AA6
A
173 184Right-handed alpha
Helix 7
AA7
A
201 228Right-handed alpha
Helix 8
AA8
B
9 21Right-handed alpha
Helix 9
AA9
B
51 65Right-handed alpha
Helix 10
AB1
B
102 106Right-handed 310
Helix 11
AB2
B
122 136Right-handed alpha
Helix 12
AB3
B
154 166Right-handed alpha
Helix 13
AB4
B
173 184Right-handed alpha
Helix 14
AB5
B
201 228Right-handed alpha
Helix 15
AB6
C
9 21Right-handed alpha
Helix 16
AB7
C
51 65Right-handed alpha
Helix 17
AB8
C
102 106Right-handed 310
Helix 18
AB9
C
122 136Right-handed alpha
Helix 19
AC1
C
154 166Right-handed alpha
Helix 20
AC2
C
173 184Right-handed alpha
Helix 21
AC3
C
201 228Right-handed alpha
Helix 22
AC4
D
9 21Right-handed alpha
Helix 23
AC5
D
51 65Right-handed alpha
Helix 24
AC6
D
102 106Right-handed 310
Helix 25
AC7
D
122 136Right-handed alpha
Helix 26
AC8
D
154 166Right-handed alpha
Helix 27
AC9
D
173 184Right-handed alpha
Helix 28
AD1
D
201 228Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 6AYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
32 38anti-parallel
Strand 3
A
41 47anti-parallel
Strand 4
A
2 7parallel
Strand 5
A
70 79parallel
Strand 6
A
169 171anti-parallel
Strand 7
A
140 147parallel
Strand 8
A
89 97parallel
Strand 9
A
119 120anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
32 38anti-parallel
Strand 3
A
41 47anti-parallel
Strand 4
A
2 7parallel
Strand 5
A
70 79parallel
Strand 6
A
188 196parallel
Strand 7
A
89 97anti-parallel
Strand 8
A
119 120anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 27first strand
Strand 2
B
32 38anti-parallel
Strand 3
B
41 47anti-parallel
Strand 4
B
2 7parallel
Strand 5
B
70 79parallel
Strand 6
B
169 171anti-parallel
Strand 7
B
140 147parallel
Strand 8
B
89 97parallel
Strand 9
B
119 120anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 27first strand
Strand 2
B
32 38anti-parallel
Strand 3
B
41 47anti-parallel
Strand 4
B
2 7parallel
Strand 5
B
70 79parallel
Strand 6
B
188 196parallel
Strand 7
B
89 97anti-parallel
Strand 8
B
119 120anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 27first strand
Strand 2
C
32 38anti-parallel
Strand 3
C
41 47anti-parallel
Strand 4
C
2 7parallel
Strand 5
C
70 79parallel
Strand 6
C
169 171anti-parallel
Strand 7
C
140 147parallel
Strand 8
C
89 97parallel
Strand 9
C
119 120anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 27first strand
Strand 2
C
32 38anti-parallel
Strand 3
C
41 47anti-parallel
Strand 4
C
2 7parallel
Strand 5
C
70 79parallel
Strand 6
C
188 196parallel
Strand 7
C
89 97anti-parallel
Strand 8
C
119 120anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
24 27first strand
Strand 2
D
32 38anti-parallel
Strand 3
D
41 47anti-parallel
Strand 4
D
2 7parallel
Strand 5
D
70 79parallel
Strand 6
D
169 171anti-parallel
Strand 7
D
140 147parallel
Strand 8
D
89 97parallel
Strand 9
D
119 120anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
24 27first strand
Strand 2
D
32 38anti-parallel
Strand 3
D
41 47anti-parallel
Strand 4
D
2 7parallel
Strand 5
D
70 79parallel
Strand 6
D
188 196parallel
Strand 7
D
89 97anti-parallel
Strand 8
D
119 120anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il