Analysis of interatomic Contacts of Structural Units in PDB entry:
6AYW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AYW entry

There are 2 chains in PDB entry 6AYW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 8LEU 300
B
 CYS 7LYS 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 6AYW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 13Right-handed alpha
Helix 2
AA2
A
51 68Right-handed alpha
Helix 3
AA3
A
97 103Right-handed alpha
Helix 4
AA4
A
109 130Right-handed alpha
Helix 5
AA5
A
138 140Right-handed 310
Helix 6
AA6
A
146 150Right-handed 310
Helix 7
AA7
A
177 181Right-handed 310
Helix 8
AA8
A
182 187Right-handed alpha
Helix 9
AA9
A
193 210Right-handed alpha
Helix 10
AB1
A
218 229Right-handed alpha
Helix 11
AB2
A
236 241Right-handed 310
Helix 12
AB3
A
242 253Right-handed alpha
Helix 13
AB4
A
262 267Right-handed alpha
Helix 14
AB5
A
269 274Right-handed alpha
Helix 15
AB6
A
274 279Right-handed alpha
Helix 16
AB7
A
284 300Right-handed alpha
Helix 17
AB8
B
8 13Right-handed alpha
Helix 18
AB9
B
48 50Right-handed 310
Helix 19
AC1
B
51 68Right-handed alpha
Helix 20
AC2
B
97 103Right-handed alpha
Helix 21
AC3
B
109 130Right-handed alpha
Helix 22
AC4
B
138 140Right-handed 310
Helix 23
AC5
B
177 181Right-handed 310
Helix 24
AC6
B
182 187Right-handed alpha
Helix 25
AC7
B
193 210Right-handed alpha
Helix 26
AC8
B
218 228Right-handed alpha
Helix 27
AC9
B
236 241Right-handed 310
Helix 28
AD1
B
242 253Right-handed alpha
Helix 29
AD2
B
262 267Right-handed alpha
Helix 30
AD3
B
269 274Right-handed alpha
Helix 31
AD4
B
274 279Right-handed alpha
Helix 32
AD5
B
284 299Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6AYW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 22first strand
Strand 2
A
27 33anti-parallel
Strand 3
A
39 46anti-parallel
Strand 4
A
85 91anti-parallel
Strand 5
A
76 82anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
162 163anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 144first strand
Strand 2
A
153 155anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 22first strand
Strand 2
B
27 33anti-parallel
Strand 3
B
39 46anti-parallel
Strand 4
B
85 91anti-parallel
Strand 5
B
76 81anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 133first strand
Strand 2
B
162 163anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 144first strand
Strand 2
B
153 155anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il