Analysis of interatomic Contacts of Structural Units in PDB entry:
6B05


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B05 entry

There are 3 chains in PDB entry 6B05 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 26GLU 921
B
 ALA 2THR 90
C
 ASP 85HIS 91
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 6B05. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 71Right-handed 310
Helix 2
AA2
A
77 86Right-handed alpha
Helix 3
AA3
A
96 104Right-handed alpha
Helix 4
AA4
A
129 132Right-handed 310
Helix 5
AA5
A
133 147Right-handed alpha
Helix 6
AA6
A
151 169Right-handed alpha
Helix 7
AA7
A
171 185Right-handed alpha
Helix 8
AA8
A
189 193Right-handed 310
Helix 9
AA9
A
198 205Right-handed alpha
Helix 10
AB1
A
206 218Right-handed alpha
Helix 11
AB2
A
219 221Right-handed 310
Helix 12
AB3
A
232 245Right-handed alpha
Helix 13
AB4
A
296 318Right-handed alpha
Helix 14
AB5
A
319 322Right-handed 310
Helix 15
AB6
A
353 371Right-handed alpha
Helix 16
AB7
A
374 395Right-handed alpha
Helix 17
AB8
A
400 414Right-handed alpha
Helix 18
AB9
A
420 434Right-handed alpha
Helix 19
AC1
A
436 449Right-handed alpha
Helix 20
AC2
A
469 483Right-handed alpha
Helix 21
AC3
A
515 517Right-handed 310
Helix 22
AC4
A
535 539Right-handed 310
Helix 23
AC5
A
558 573Right-handed alpha
Helix 24
AC6
A
578 590Right-handed alpha
Helix 25
AC7
A
612 626Right-handed alpha
Helix 26
AC8
A
630 649Right-handed alpha
Helix 27
AC9
A
651 666Right-handed alpha
Helix 28
AD1
A
674 680Right-handed alpha
Helix 29
AD2
A
682 695Right-handed alpha
Helix 30
AD3
A
707 719Right-handed alpha
Helix 31
AD4
A
765 787Right-handed alpha
Helix 32
AD5
A
789 792Right-handed 310
Helix 33
AD6
A
822 841Right-handed alpha
Helix 34
AD7
A
842 860Right-handed alpha
Helix 35
AD8
A
863 879Right-handed alpha
Helix 36
AD9
A
881 885Right-handed 310
Helix 37
AE1
A
886 894Right-handed 310
Helix 38
AE2
A
895 904Right-handed alpha
Helix 39
AE3
B
24 33Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6B05. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
398 399anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 39first strand
Strand 2
A
45 50anti-parallel
Strand 3
A
223 229parallel
Strand 4
A
58 64anti-parallel
Strand 5
A
121 125anti-parallel
Strand 6
A
112 116anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 270first strand
Strand 2
A
452 458parallel
Strand 3
A
280 288anti-parallel
Strand 4
A
340 349anti-parallel
Strand 5
A
326 335anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 514first strand
Strand 2
A
519 524anti-parallel
Strand 3
A
529 533anti-parallel
Strand 4
A
699 703parallel
Strand 5
A
541 548anti-parallel
Strand 6
A
602 609anti-parallel
Strand 7
A
592 597anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
739 747first strand
Strand 2
A
912 919parallel
Strand 3
A
752 761anti-parallel
Strand 4
A
809 818anti-parallel
Strand 5
A
794 804anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 20first strand
Strand 2
B
3 9anti-parallel
Strand 3
B
87 89parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il