Analysis of interatomic Contacts of Structural Units in PDB entry:
6B0F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B0F entry

There are 2 chains in PDB entry 6B0F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 309LEU 544
B
 LEU 308LEU 525
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6B0F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
311 323Right-handed alpha
Helix 2
AA2
A
339 364Right-handed alpha
Helix 3
AA3
A
371 381Right-handed alpha
Helix 4
AA4
A
382 395Right-handed alpha
Helix 5
AA5
A
396 398Right-handed 310
Helix 6
AA6
A
420 438Right-handed alpha
Helix 7
AA7
A
441 456Right-handed alpha
Helix 8
AA8
A
475 493Right-handed alpha
Helix 9
AA9
A
496 526Right-handed alpha
Helix 10
AB1
A
535 544Right-handed alpha
Helix 11
AB2
B
311 323Right-handed alpha
Helix 12
AB3
B
340 363Right-handed alpha
Helix 13
AB4
B
375 395Right-handed alpha
Helix 14
AB5
B
396 398Right-handed 310
Helix 15
AB6
B
422 438Right-handed alpha
Helix 16
AB7
B
441 456Right-handed alpha
Helix 17
AB8
B
472 494Right-handed alpha
Helix 18
AB9
B
496 525Right-handed alpha
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There are 2 sheets in PDB entry 6B0F. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 405first strand
Strand 2
A
408 410anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 405first strand
Strand 2
B
408 410anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il