Analysis of interatomic Contacts of Structural Units in PDB entry:
6B10


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B10 entry

There are 2 chains in PDB entry 6B10 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -7ARG 325
B
 GLU -7ARG 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 6B10. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 45Right-handed alpha
Helix 2
AA2
A
55 60Right-handed alpha
Helix 3
AA3
A
61 63Right-handed 310
Helix 4
AA4
A
79 84Right-handed alpha
Helix 5
AA5
A
111 124Right-handed alpha
Helix 6
AA6
A
137 139Right-handed 310
Helix 7
AA7
A
153 160Right-handed alpha
Helix 8
AA8
A
166 179Right-handed alpha
Helix 9
AA9
A
199 202Right-handed 310
Helix 10
AB1
A
224 237Right-handed alpha
Helix 11
AB2
A
280 293Right-handed alpha
Helix 12
AB3
A
305 310Right-handed 310
Helix 13
AB4
A
313 317Right-handed 310
Helix 14
AB5
B
25 27Right-handed 310
Helix 15
AB6
B
28 45Right-handed alpha
Helix 16
AB7
B
55 63Right-handed 310
Helix 17
AB8
B
79 84Right-handed alpha
Helix 18
AB9
B
102 105Right-handed 310
Helix 19
AC1
B
106 124Right-handed alpha
Helix 20
AC2
B
137 139Right-handed 310
Helix 21
AC3
B
153 157Right-handed alpha
Helix 22
AC4
B
166 179Right-handed alpha
Helix 23
AC5
B
199 202Right-handed 310
Helix 24
AC6
B
224 237Right-handed alpha
Helix 25
AC7
B
280 293Right-handed alpha
Helix 26
AC8
B
305 310Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 6B10. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
86 90anti-parallel
Strand 3
A
93 100anti-parallel
Strand 4
A
130 135parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 72first strand
Strand 2
A
48 53parallel
Strand 3
A
11 17parallel
Strand 4
A
318 321anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
A
148 152anti-parallel
Strand 3
A
182 186parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 208first strand
Strand 2
A
211 216anti-parallel
Strand 3
A
241 246parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
256 257anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 268first strand
Strand 2
A
271 276anti-parallel
Strand 3
A
297 302parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
86 90anti-parallel
Strand 3
B
93 100anti-parallel
Strand 4
B
130 135parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 72first strand
Strand 2
B
48 53parallel
Strand 3
B
11 17parallel
Strand 4
B
317 321anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 143first strand
Strand 2
B
148 152anti-parallel
Strand 3
B
182 186parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 208first strand
Strand 2
B
211 216anti-parallel
Strand 3
B
241 246parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 253first strand
Strand 2
B
256 257anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 268first strand
Strand 2
B
271 276anti-parallel
Strand 3
B
297 302parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il