Analysis of interatomic Contacts of Structural Units in PDB entry:
6B11


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B11 entry

There are 4 chains in PDB entry 6B11 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 32THR 40
A
 PRO 42TRP 420
B
 SER 32THR 40
B
 PRO 42TRP 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6B11. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 56Right-handed alpha
Helix 2
AA2
A
74 83Right-handed alpha
Helix 3
AA3
A
90 94Right-handed 310
Helix 4
AA4
A
109 113Right-handed 310
Helix 5
AA5
A
116 126Right-handed alpha
Helix 6
AA6
A
127 129Right-handed 310
Helix 7
AA7
A
130 156Right-handed alpha
Helix 8
AA8
A
161 165Right-handed alpha
Helix 9
AA9
A
165 179Right-handed alpha
Helix 10
AB1
A
181 183Right-handed 310
Helix 11
AB2
A
184 196Right-handed alpha
Helix 12
AB3
A
201 223Right-handed alpha
Helix 13
AB4
A
229 241Right-handed alpha
Helix 14
AB5
A
245 276Right-handed alpha
Helix 15
AB6
A
278 288Right-handed alpha
Helix 16
AB7
A
291 304Right-handed alpha
Helix 17
AB8
A
333 338Right-handed alpha
Helix 18
AB9
A
371 390Right-handed alpha
Helix 19
AC1
B
47 55Right-handed alpha
Helix 20
AC2
B
74 84Right-handed alpha
Helix 21
AC3
B
90 94Right-handed 310
Helix 22
AC4
B
109 113Right-handed 310
Helix 23
AC5
B
116 130Right-handed alpha
Helix 24
AC6
B
130 156Right-handed alpha
Helix 25
AC7
B
161 165Right-handed alpha
Helix 26
AC8
B
165 179Right-handed alpha
Helix 27
AC9
B
181 183Right-handed 310
Helix 28
AD1
B
184 196Right-handed alpha
Helix 29
AD2
B
201 222Right-handed alpha
Helix 30
AD3
B
230 241Right-handed alpha
Helix 31
AD4
B
245 277Right-handed alpha
Helix 32
AD5
B
278 288Right-handed alpha
Helix 33
AD6
B
291 304Right-handed alpha
Helix 34
AD7
B
333 338Right-handed alpha
Helix 35
AD8
B
364 368Right-handed 310
Helix 36
AD9
B
371 390Right-handed alpha
Helix 37
AE1
B
398 402Right-handed 310
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There are 6 sheets in PDB entry 6B11. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
58 62parallel
Strand 3
A
68 72anti-parallel
Strand 4
A
329 332parallel
Strand 5
A
309 313anti-parallel
Strand 6
A
87 88anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
417 419anti-parallel
Strand 3
A
394 395anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 319first strand
Strand 2
A
322 324anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 62first strand
Strand 2
B
68 72anti-parallel
Strand 3
B
329 332parallel
Strand 4
B
309 313anti-parallel
Strand 5
B
87 88anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 160first strand
Strand 2
B
417 419anti-parallel
Strand 3
B
394 395anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 319first strand
Strand 2
B
322 324anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il