Analysis of interatomic Contacts of Structural Units in PDB entry:
6B12


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B12 entry

There are 4 chains in PDB entry 6B12 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 290GLU 408
B
 MSE 1ARG 153
C
 MSE 1ARG 153
D
 ALA 290GLU 408
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6B12. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
313 322Right-handed alpha
Helix 2
AA2
A
338 345Right-handed alpha
Helix 3
AA3
B
20 27Right-handed alpha
Helix 4
AA4
C
20 27Right-handed alpha
Helix 5
AA5
D
313 322Right-handed alpha
Helix 6
AA6
D
338 345Right-handed alpha
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There are 9 sheets in PDB entry 6B12. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 302first strand
Strand 2
A
368 374anti-parallel
Strand 3
A
386 390anti-parallel
Strand 4
A
330 331anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 312first strand
Strand 2
A
358 364anti-parallel
Strand 3
A
396 404anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 16first strand
Strand 2
B
2 9anti-parallel
Strand 3
B
34 41anti-parallel
Strand 4
B
44 58anti-parallel
Strand 5
B
64 70anti-parallel
Strand 6
B
78 84anti-parallel
Strand 7
B
90 92anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 99first strand
Strand 2
B
102 112anti-parallel
Strand 3
B
121 128anti-parallel
Strand 4
B
134 140anti-parallel
Strand 5
B
146 152anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 16first strand
Strand 2
C
2 9anti-parallel
Strand 3
C
34 41anti-parallel
Strand 4
C
44 49anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 58first strand
Strand 2
C
64 70anti-parallel
Strand 3
C
78 84anti-parallel
Strand 4
C
90 92anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
96 99first strand
Strand 2
C
102 112anti-parallel
Strand 3
C
121 128anti-parallel
Strand 4
C
134 140anti-parallel
Strand 5
C
146 152anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
298 302first strand
Strand 2
D
368 374anti-parallel
Strand 3
D
386 391anti-parallel
Strand 4
D
330 331anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
307 312first strand
Strand 2
D
358 364anti-parallel
Strand 3
D
396 404anti-parallel
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