Analysis of interatomic Contacts of Structural Units in PDB entry:
6B19


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B19 entry

There are 4 chains in PDB entry 6B19 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 5ALA 554
B
 ILE 5GLN 428
C
 G 181 C 199
D
 G 59 C 77
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6B19. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 44Right-handed alpha
Helix 2
AA2
A
77 83Right-handed alpha
Helix 3
AA3
A
155 175Right-handed alpha
Helix 4
AA4
A
196 211Right-handed alpha
Helix 5
AA5
A
255 268Right-handed alpha
Helix 6
AA6
A
269 271Right-handed 310
Helix 7
AA7
A
276 283Right-handed alpha
Helix 8
AA8
A
296 312Right-handed alpha
Helix 9
AA9
A
363 383Right-handed alpha
Helix 10
AB1
A
394 403Right-handed alpha
Helix 11
AB2
A
473 489Right-handed alpha
Helix 12
AB3
A
499 508Right-handed alpha
Helix 13
AB4
A
515 528Right-handed alpha
Helix 14
AB5
A
545 550Right-handed alpha
Helix 15
AB6
B
28 45Right-handed alpha
Helix 16
AB7
B
77 84Right-handed alpha
Helix 17
AB8
B
84 92Right-handed alpha
Helix 18
AB9
B
114 118Right-handed 310
Helix 19
AC1
B
122 126Right-handed 310
Helix 20
AC2
B
134 138Right-handed 310
Helix 21
AC3
B
154 160Right-handed alpha
Helix 22
AC4
B
160 175Right-handed alpha
Helix 23
AC5
B
194 212Right-handed alpha
Helix 24
AC6
B
253 268Right-handed alpha
Helix 25
AC7
B
278 283Right-handed alpha
Helix 26
AC8
B
296 312Right-handed alpha
Helix 27
AC9
B
363 384Right-handed alpha
Helix 28
AD1
B
394 402Right-handed alpha
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There are 8 sheets in PDB entry 6B19. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
145 146anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
189 190anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 353first strand
Strand 2
A
336 342anti-parallel
Strand 3
A
326 333anti-parallel
Strand 4
A
388 390parallel
Strand 5
A
414 415parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 443first strand
Strand 2
A
455 458anti-parallel
Strand 3
A
465 467anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
492 493first strand
Strand 2
A
530 531parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
72 74anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 183first strand
Strand 2
B
186 188anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
327 330first strand
Strand 2
B
338 342anti-parallel
Strand 3
B
348 350anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il