Analysis of interatomic Contacts of Structural Units in PDB entry:
6B1M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6B1M entry

There are 2 chains in PDB entry 6B1M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 0	SER 381
A	SER 0	SER 381

There are 35 helices in PDB entry 6B1M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	52	57	Right-handed alpha
Helix 2	AA2	B	62	64	Right-handed 310
Helix 3	AA3	B	69	73	Right-handed 310
Helix 4	AA4	B	80	87	Right-handed alpha
Helix 5	AA5	B	88	90	Right-handed 310
Helix 6	AA6	B	115	136	Right-handed alpha
Helix 7	AA7	B	151	165	Right-handed alpha
Helix 8	AA8	B	175	183	Right-handed alpha
Helix 9	AA9	B	184	188	Right-handed 310
Helix 10	AB1	B	229	250	Right-handed alpha
Helix 11	AB2	B	256	274	Right-handed alpha
Helix 12	AB3	B	299	306	Right-handed alpha
Helix 13	AB4	B	306	313	Right-handed alpha
Helix 14	AB5	B	313	325	Right-handed alpha
Helix 15	AB6	B	327	331	Right-handed 310
Helix 16	AB7	B	338	342	Right-handed 310
Helix 17	AB8	B	343	354	Right-handed alpha
Helix 18	AB9	B	367	381	Right-handed alpha
Helix 19	AC1	A	52	57	Right-handed alpha
Helix 20	AC2	A	62	64	Right-handed 310
Helix 21	AC3	A	69	73	Right-handed 310
Helix 22	AC4	A	80	88	Right-handed alpha
Helix 23	AC5	A	115	136	Right-handed alpha
Helix 24	AC6	A	151	165	Right-handed alpha
Helix 25	AC7	A	175	183	Right-handed alpha
Helix 26	AC8	A	229	250	Right-handed alpha
Helix 27	AC9	A	256	274	Right-handed alpha
Helix 28	AD1	A	299	306	Right-handed alpha
Helix 29	AD2	A	306	313	Right-handed alpha
Helix 30	AD3	A	313	325	Right-handed alpha
Helix 31	AD4	A	327	331	Right-handed 310
Helix 32	AD5	A	338	342	Right-handed 310
Helix 33	AD6	A	343	354	Right-handed alpha
Helix 34	AD7	A	364	366	Right-handed 310
Helix 35	AD8	A	367	381	Right-handed alpha

There are 12 sheets in PDB entry 6B1M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	28	first strand
Strand 2	B	15	22	anti-parallel
Strand 3	B	38	39	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	28	first strand
Strand 2	B	15	22	anti-parallel
Strand 3	B	7	11	anti-parallel
Strand 4	B	141	146	parallel
Strand 5	B	168	174	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	42	44	anti-parallel
Strand 3	B	66	67	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	97	first strand
Strand 2	B	100	107	anti-parallel
Strand 3	B	110	114	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	225	first strand
Strand 2	B	205	213	anti-parallel
Strand 3	B	193	200	anti-parallel
Strand 4	B	333	337	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	288	first strand
Strand 2	B	291	298	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	28	first strand
Strand 2	A	15	22	anti-parallel
Strand 3	A	38	39	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	28	first strand
Strand 2	A	15	22	anti-parallel
Strand 3	A	7	11	anti-parallel
Strand 4	A	141	146	parallel
Strand 5	A	168	174	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	51	first strand
Strand 2	A	42	44	anti-parallel
Strand 3	A	66	67	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	97	first strand
Strand 2	A	100	107	anti-parallel
Strand 3	A	110	114	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	225	first strand
Strand 2	A	205	213	anti-parallel
Strand 3	A	193	200	anti-parallel
Strand 4	A	333	337	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	288	first strand
Strand 2	A	291	298	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6B1M

Analysis of interatomic Contacts of Structural Units in PDB entry:
6B1M