Analysis of interatomic Contacts of Structural Units in PDB entry:
6B1V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B1V entry

There are 3 chains in PDB entry 6B1V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 28THR 479
B
 GLN 28THR 479
C
 GLN 28THR 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 6B1V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 49Right-handed 310
Helix 2
AA2
A
55 64Right-handed alpha
Helix 3
AA3
A
77 88Right-handed alpha
Helix 4
AA4
A
90 95Right-handed 310
Helix 5
AA5
A
115 123Right-handed alpha
Helix 6
AA6
A
138 146Right-handed 310
Helix 7
AA7
A
162 176Right-handed alpha
Helix 8
AA8
A
182 186Right-handed 310
Helix 9
AA9
A
200 218Right-handed alpha
Helix 10
AB1
A
239 244Right-handed alpha
Helix 11
AB2
A
251 278Right-handed alpha
Helix 12
AB3
A
280 282Right-handed 310
Helix 13
AB4
A
295 299Right-handed 310
Helix 14
AB5
A
313 318Right-handed alpha
Helix 15
AB6
A
343 353Right-handed alpha
Helix 16
AB7
A
357 361Right-handed 310
Helix 17
AB8
A
367 373Right-handed alpha
Helix 18
AB9
A
428 430Right-handed 310
Helix 19
AC1
A
431 447Right-handed alpha
Helix 20
AC2
A
457 467Right-handed alpha
Helix 21
AC3
A
471 476Right-handed alpha
Helix 22
AC4
B
45 49Right-handed 310
Helix 23
AC5
B
55 64Right-handed alpha
Helix 24
AC6
B
77 88Right-handed alpha
Helix 25
AC7
B
90 95Right-handed 310
Helix 26
AC8
B
115 123Right-handed alpha
Helix 27
AC9
B
138 146Right-handed 310
Helix 28
AD1
B
162 176Right-handed alpha
Helix 29
AD2
B
182 186Right-handed 310
Helix 30
AD3
B
200 218Right-handed alpha
Helix 31
AD4
B
239 244Right-handed alpha
Helix 32
AD5
B
251 278Right-handed alpha
Helix 33
AD6
B
280 282Right-handed 310
Helix 34
AD7
B
295 299Right-handed 310
Helix 35
AD8
B
313 318Right-handed alpha
Helix 36
AD9
B
343 353Right-handed alpha
Helix 37
AE1
B
357 361Right-handed 310
Helix 38
AE2
B
367 373Right-handed alpha
Helix 39
AE3
B
428 430Right-handed 310
Helix 40
AE4
B
431 447Right-handed alpha
Helix 41
AE5
B
457 467Right-handed alpha
Helix 42
AE6
B
471 476Right-handed alpha
Helix 43
AE7
C
45 49Right-handed 310
Helix 44
AE8
C
55 64Right-handed alpha
Helix 45
AE9
C
77 88Right-handed alpha
Helix 46
AF1
C
90 95Right-handed 310
Helix 47
AF2
C
115 123Right-handed alpha
Helix 48
AF3
C
138 146Right-handed 310
Helix 49
AF4
C
162 176Right-handed alpha
Helix 50
AF5
C
182 186Right-handed 310
Helix 51
AF6
C
200 218Right-handed alpha
Helix 52
AF7
C
239 244Right-handed alpha
Helix 53
AF8
C
251 278Right-handed alpha
Helix 54
AF9
C
280 282Right-handed 310
Helix 55
AG1
C
295 299Right-handed 310
Helix 56
AG2
C
313 318Right-handed alpha
Helix 57
AG3
C
343 353Right-handed alpha
Helix 58
AG4
C
357 361Right-handed 310
Helix 59
AG5
C
367 373Right-handed alpha
Helix 60
AG6
C
428 430Right-handed 310
Helix 61
AG7
C
431 447Right-handed alpha
Helix 62
AG8
C
457 467Right-handed alpha
Helix 63
AG9
C
471 476Right-handed alpha
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There are 9 sheets in PDB entry 6B1V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
189 190anti-parallel
Strand 3
A
150 154anti-parallel
Strand 4
A
126 132parallel
Strand 5
A
223 228parallel
Strand 6
A
31 37parallel
Strand 7
A
284 290parallel
Strand 8
A
321 324anti-parallel
Strand 9
A
66 68anti-parallel
Strand 10
A
333 335parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
339 340parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 388first strand
Strand 2
A
393 399anti-parallel
Strand 3
A
402 406anti-parallel
Strand 4
A
413 416anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 194first strand
Strand 2
B
189 190anti-parallel
Strand 3
B
150 154anti-parallel
Strand 4
B
126 132parallel
Strand 5
B
223 228parallel
Strand 6
B
31 37parallel
Strand 7
B
284 290parallel
Strand 8
B
321 324anti-parallel
Strand 9
B
66 68anti-parallel
Strand 10
B
333 335parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
339 340parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
383 388first strand
Strand 2
B
393 399anti-parallel
Strand 3
B
402 406anti-parallel
Strand 4
B
413 416anti-parallel
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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 194first strand
Strand 2
C
189 190anti-parallel
Strand 3
C
150 154anti-parallel
Strand 4
C
126 132parallel
Strand 5
C
223 228parallel
Strand 6
C
31 37parallel
Strand 7
C
284 290parallel
Strand 8
C
321 324anti-parallel
Strand 9
C
66 68anti-parallel
Strand 10
C
333 335parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 72first strand
Strand 2
C
339 340parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
383 388first strand
Strand 2
C
393 399anti-parallel
Strand 3
C
402 406anti-parallel
Strand 4
C
413 416anti-parallel
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