Analysis of interatomic Contacts of Structural Units in PDB entry:
6B2Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B2Q entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 8 chains in PDB entry 6B2Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3LEU 223
A
 VAL 225SER 284
B
 PRO 3LEU 223
B
 VAL 225SER 284
C
 PRO 3LEU 223
C
 VAL 225SER 284
D
 PRO 3LEU 223
D
 VAL 225PRO 283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 6B2Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 67Right-handed alpha
Helix 2
AA2
A
103 111Right-handed alpha
Helix 3
AA3
A
114 135Right-handed alpha
Helix 4
AA4
A
143 145Right-handed 310
Helix 5
AA5
A
185 190Right-handed alpha
Helix 6
AA6
A
195 213Right-handed alpha
Helix 7
AA7
A
221 231Right-handed alpha
Helix 8
AA8
A
242 253Right-handed alpha
Helix 9
AA9
A
256 260Right-handed 310
Helix 10
AB1
A
263 276Right-handed alpha
Helix 11
AB2
B
51 67Right-handed alpha
Helix 12
AB3
B
103 111Right-handed alpha
Helix 13
AB4
B
114 135Right-handed alpha
Helix 14
AB5
B
143 145Right-handed 310
Helix 15
AB6
B
177 182Right-handed alpha
Helix 16
AB7
B
185 190Right-handed alpha
Helix 17
AB8
B
195 213Right-handed alpha
Helix 18
AB9
B
222 231Right-handed alpha
Helix 19
AC1
B
242 253Right-handed alpha
Helix 20
AC2
B
256 260Right-handed 310
Helix 21
AC3
B
263 276Right-handed alpha
Helix 22
AC4
C
51 67Right-handed alpha
Helix 23
AC5
C
103 111Right-handed alpha
Helix 24
AC6
C
114 136Right-handed alpha
Helix 25
AC7
C
185 191Right-handed alpha
Helix 26
AC8
C
196 212Right-handed alpha
Helix 27
AC9
C
221 231Right-handed alpha
Helix 28
AD1
C
242 253Right-handed alpha
Helix 29
AD2
C
256 260Right-handed 310
Helix 30
AD3
C
263 277Right-handed alpha
Helix 31
AD4
D
47 50Right-handed 310
Helix 32
AD5
D
51 66Right-handed alpha
Helix 33
AD6
D
103 111Right-handed alpha
Helix 34
AD7
D
114 135Right-handed alpha
Helix 35
AD8
D
143 145Right-handed 310
Helix 36
AD9
D
178 182Right-handed alpha
Helix 37
AE1
D
185 191Right-handed alpha
Helix 38
AE2
D
196 213Right-handed alpha
Helix 39
AE3
D
221 232Right-handed alpha
Helix 40
AE4
D
242 253Right-handed alpha
Helix 41
AE5
D
263 276Right-handed alpha
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There are 8 sheets in PDB entry 6B2Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
13 21anti-parallel
Strand 3
A
25 32anti-parallel
Strand 4
A
37 44anti-parallel
Strand 5
A
92 95anti-parallel
Strand 6
A
76 80anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
147 149anti-parallel
Strand 3
A
155 157anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 9first strand
Strand 2
B
13 21anti-parallel
Strand 3
B
25 32anti-parallel
Strand 4
B
38 44anti-parallel
Strand 5
B
92 95anti-parallel
Strand 6
B
76 80anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
147 149anti-parallel
Strand 3
B
155 157anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 9first strand
Strand 2
C
13 21anti-parallel
Strand 3
C
25 32anti-parallel
Strand 4
C
37 44anti-parallel
Strand 5
C
90 96anti-parallel
Strand 6
C
76 82anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
101 102first strand
Strand 2
C
147 149anti-parallel
Strand 3
C
155 157anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 9first strand
Strand 2
D
13 21anti-parallel
Strand 3
D
25 32anti-parallel
Strand 4
D
37 44anti-parallel
Strand 5
D
91 95anti-parallel
Strand 6
D
76 81anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
101 102first strand
Strand 2
D
147 149anti-parallel
Strand 3
D
155 157anti-parallel
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