Analysis of interatomic Contacts of Structural Units in PDB entry:
6B2R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B2R entry

There are 3 chains in PDB entry 6B2R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 15TRP 358
B
 HIS 20ALA 142
B
 LEU 144TRP 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6B2R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 57Right-handed alpha
Helix 2
AA2
A
80 96Right-handed alpha
Helix 3
AA3
A
99 103Right-handed 310
Helix 4
AA4
A
119 129Right-handed alpha
Helix 5
AA5
A
141 143Right-handed 310
Helix 6
AA6
A
144 160Right-handed alpha
Helix 7
AA7
A
173 185Right-handed alpha
Helix 8
AA8
A
190 198Right-handed alpha
Helix 9
AA9
A
199 203Right-handed 310
Helix 10
AB1
A
216 218Right-handed 310
Helix 11
AB2
A
233 236Right-handed 310
Helix 12
AB3
A
249 273Right-handed alpha
Helix 13
AB4
A
275 279Right-handed 310
Helix 14
AB5
A
288 300Right-handed alpha
Helix 15
AB6
A
302 306Right-handed 310
Helix 16
AB7
A
309 314Right-handed alpha
Helix 17
AB8
A
316 318Right-handed 310
Helix 18
AB9
A
319 331Right-handed alpha
Helix 19
AC1
B
42 49Right-handed alpha
Helix 20
AC2
B
49 55Right-handed alpha
Helix 21
AC3
B
61 66Right-handed alpha
Helix 22
AC4
B
80 96Right-handed alpha
Helix 23
AC5
B
99 101Right-handed 310
Helix 24
AC6
B
119 129Right-handed alpha
Helix 25
AC7
B
141 143Right-handed 310
Helix 26
AC8
B
144 159Right-handed alpha
Helix 27
AC9
B
173 186Right-handed alpha
Helix 28
AD1
B
190 198Right-handed alpha
Helix 29
AD2
B
199 203Right-handed 310
Helix 30
AD3
B
216 218Right-handed 310
Helix 31
AD4
B
233 236Right-handed 310
Helix 32
AD5
B
249 273Right-handed alpha
Helix 33
AD6
B
275 279Right-handed 310
Helix 34
AD7
B
288 300Right-handed alpha
Helix 35
AD8
B
302 306Right-handed 310
Helix 36
AD9
B
309 314Right-handed alpha
Helix 37
AE1
B
316 318Right-handed 310
Helix 38
AE2
B
319 331Right-handed alpha
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There are 7 sheets in PDB entry 6B2R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 35first strand
Strand 2
A
206 214anti-parallel
Strand 3
A
164 171anti-parallel
Strand 4
A
105 108parallel
Strand 5
A
135 140parallel
Strand 6
B
135 140anti-parallel
Strand 7
B
103 108parallel
Strand 8
B
164 171parallel
Strand 9
B
206 214anti-parallel
Strand 10
B
26 35anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
71 74anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 231first strand
Strand 2
A
350 357anti-parallel
Strand 3
A
339 346anti-parallel
Strand 4
A
281 284parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 242first strand
Strand 2
A
245 248anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 41first strand
Strand 2
B
71 74anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 231first strand
Strand 2
B
350 357anti-parallel
Strand 3
B
339 346anti-parallel
Strand 4
B
281 284parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 241first strand
Strand 2
B
246 248anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il