Analysis of interatomic Contacts of Structural Units in PDB entry:
6B39


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B39 entry

There is 1 chain in PDB entry 6B39 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -7SER 629
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 6B39. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-6 1Right-handed alpha
Helix 2
AA2
A
1 25Right-handed alpha
Helix 3
AA3
A
25 34Right-handed alpha
Helix 4
AA4
A
38 46Right-handed alpha
Helix 5
AA5
A
48 62Right-handed alpha
Helix 6
AA6
A
78 85Right-handed 310
Helix 7
AA7
A
86 95Right-handed 310
Helix 8
AA8
A
96 102Right-handed alpha
Helix 9
AA9
A
109 118Right-handed alpha
Helix 10
AB1
A
119 122Right-handed 310
Helix 11
AB2
A
124 146Right-handed alpha
Helix 12
AB3
A
160 174Right-handed alpha
Helix 13
AB4
A
187 196Right-handed alpha
Helix 14
AB5
A
199 205Right-handed alpha
Helix 15
AB6
A
206 211Right-handed alpha
Helix 16
AB7
A
212 219Right-handed alpha
Helix 17
AB8
A
220 225Right-handed alpha
Helix 18
AB9
A
250 264Right-handed alpha
Helix 19
AC1
A
268 272Right-handed 310
Helix 20
AC2
A
284 298Right-handed alpha
Helix 21
AC3
A
299 304Right-handed 310
Helix 22
AC4
A
317 328Right-handed alpha
Helix 23
AC5
A
342 352Right-handed alpha
Helix 24
AC6
A
356 358Right-handed 310
Helix 25
AC7
A
367 371Right-handed 310
Helix 26
AC8
A
378 385Right-handed alpha
Helix 27
AC9
A
386 388Right-handed 310
Helix 28
AD1
A
403 420Right-handed alpha
Helix 29
AD2
A
436 443Right-handed alpha
Helix 30
AD3
A
448 459Right-handed alpha
Helix 31
AD4
A
465 476Right-handed alpha
Helix 32
AD5
A
513 515Right-handed 310
Helix 33
AD6
A
516 522Right-handed alpha
Helix 34
AD7
A
531 542Right-handed alpha
Helix 35
AD8
A
583 601Right-handed alpha
Helix 36
AD9
A
610 620Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6B39. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
72 75anti-parallel
Strand 3
A
65 67anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 179first strand
Strand 2
A
184 186anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 337first strand
Strand 2
A
310 315parallel
Strand 3
A
275 279parallel
Strand 4
A
360 365parallel
Strand 5
A
427 432parallel
Strand 6
A
497 504anti-parallel
Strand 7
A
478 480anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 337first strand
Strand 2
A
310 315parallel
Strand 3
A
275 279parallel
Strand 4
A
360 365parallel
Strand 5
A
427 432parallel
Strand 6
A
497 504anti-parallel
Strand 7
A
486 488anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 511first strand
Strand 2
A
547 551anti-parallel
Strand 3
A
554 564anti-parallel
Strand 4
A
569 577anti-parallel
Strand 5
A
524 525anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 511first strand
Strand 2
A
547 551anti-parallel
Strand 3
A
554 564anti-parallel
Strand 4
A
569 577anti-parallel
Strand 5
A
607 609parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il