Analysis of interatomic Contacts of Structural Units in PDB entry:
6B3B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B3B entry

There is 1 chain in PDB entry 6B3B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1SER 629
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6B3B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 25Right-handed alpha
Helix 2
AA2
A
25 33Right-handed alpha
Helix 3
AA3
A
37 46Right-handed alpha
Helix 4
AA4
A
48 62Right-handed alpha
Helix 5
AA5
A
77 85Right-handed 310
Helix 6
AA6
A
86 95Right-handed 310
Helix 7
AA7
A
96 101Right-handed alpha
Helix 8
AA8
A
109 118Right-handed alpha
Helix 9
AA9
A
119 122Right-handed 310
Helix 10
AB1
A
124 146Right-handed alpha
Helix 11
AB2
A
160 174Right-handed alpha
Helix 12
AB3
A
187 196Right-handed alpha
Helix 13
AB4
A
197 205Right-handed alpha
Helix 14
AB5
A
206 212Right-handed alpha
Helix 15
AB6
A
212 219Right-handed alpha
Helix 16
AB7
A
221 226Right-handed alpha
Helix 17
AB8
A
237 251Right-handed alpha
Helix 18
AB9
A
252 255Right-handed 310
Helix 19
AC1
A
256 266Right-handed alpha
Helix 20
AC2
A
268 272Right-handed 310
Helix 21
AC3
A
284 298Right-handed alpha
Helix 22
AC4
A
299 303Right-handed 310
Helix 23
AC5
A
317 328Right-handed alpha
Helix 24
AC6
A
342 353Right-handed alpha
Helix 25
AC7
A
356 358Right-handed 310
Helix 26
AC8
A
367 371Right-handed 310
Helix 27
AC9
A
378 386Right-handed alpha
Helix 28
AD1
A
403 420Right-handed alpha
Helix 29
AD2
A
436 443Right-handed alpha
Helix 30
AD3
A
448 459Right-handed alpha
Helix 31
AD4
A
465 476Right-handed alpha
Helix 32
AD5
A
513 515Right-handed 310
Helix 33
AD6
A
516 522Right-handed alpha
Helix 34
AD7
A
531 542Right-handed alpha
Helix 35
AD8
A
583 602Right-handed alpha
Helix 36
AD9
A
610 620Right-handed alpha
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There are 7 sheets in PDB entry 6B3B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
73 75anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
185 186anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 337first strand
Strand 2
A
310 315parallel
Strand 3
A
275 279parallel
Strand 4
A
360 365parallel
Strand 5
A
427 432parallel
Strand 6
A
497 504anti-parallel
Strand 7
A
478 480anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 337first strand
Strand 2
A
310 315parallel
Strand 3
A
275 279parallel
Strand 4
A
360 365parallel
Strand 5
A
427 432parallel
Strand 6
A
497 504anti-parallel
Strand 7
A
486 488anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 395first strand
Strand 2
A
401 402anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 511first strand
Strand 2
A
547 551anti-parallel
Strand 3
A
554 564anti-parallel
Strand 4
A
569 577anti-parallel
Strand 5
A
524 525anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 511first strand
Strand 2
A
547 551anti-parallel
Strand 3
A
554 564anti-parallel
Strand 4
A
569 577anti-parallel
Strand 5
A
607 609parallel
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