Analysis of interatomic Contacts of Structural Units in PDB entry:
6B3Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B3Y entry

There are 2 chains in PDB entry 6B3Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 722LYS 946
B
 PHE 723LYS 947
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 6B3Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
731 743Right-handed alpha
Helix 2
AA2
A
747 759Right-handed alpha
Helix 3
AA3
A
767 787Right-handed alpha
Helix 4
AA4
A
791 797Right-handed alpha
Helix 5
AA5
A
879 881Right-handed 310
Helix 6
AA6
A
882 904Right-handed alpha
Helix 7
AA7
A
906 927Right-handed alpha
Helix 8
AA8
A
930 936Right-handed alpha
Helix 9
AA9
A
939 946Right-handed alpha
Helix 10
AB1
B
731 743Right-handed alpha
Helix 11
AB2
B
747 759Right-handed alpha
Helix 12
AB3
B
767 788Right-handed alpha
Helix 13
AB4
B
791 798Right-handed alpha
Helix 14
AB5
B
879 881Right-handed 310
Helix 15
AB6
B
882 904Right-handed alpha
Helix 16
AB7
B
906 927Right-handed alpha
Helix 17
AB8
B
930 936Right-handed alpha
Helix 18
AB9
B
939 946Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 6B3Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
804 813first strand
Strand 2
A
816 823anti-parallel
Strand 3
A
826 831anti-parallel
Strand 4
A
837 842anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
846 856first strand
Strand 2
A
859 868anti-parallel
Strand 3
A
875 877anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
804 807first strand
Strand 2
B
816 823anti-parallel
Strand 3
B
811 813anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
804 807first strand
Strand 2
B
816 823anti-parallel
Strand 3
B
826 830anti-parallel
Strand 4
B
837 842anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
846 856first strand
Strand 2
B
859 868anti-parallel
Strand 3
B
875 877anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il