Analysis of interatomic Contacts of Structural Units in PDB entry:
6B41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B41 entry

There is 1 chain in PDB entry 6B41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2ALA 581
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6B41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed alpha
Helix 2
AA2
A
15 27Right-handed alpha
Helix 3
AA3
A
33 49Right-handed alpha
Helix 4
AA4
A
82 101Right-handed alpha
Helix 5
AA5
A
114 129Right-handed alpha
Helix 6
AA6
A
142 149Right-handed alpha
Helix 7
AA7
A
153 169Right-handed alpha
Helix 8
AA8
A
211 217Right-handed alpha
Helix 9
AA9
A
219 226Right-handed 310
Helix 10
AB1
A
231 242Right-handed alpha
Helix 11
AB2
A
253 270Right-handed alpha
Helix 12
AB3
A
276 290Right-handed alpha
Helix 13
AB4
A
297 313Right-handed alpha
Helix 14
AB5
A
318 331Right-handed alpha
Helix 15
AB6
A
333 349Right-handed alpha
Helix 16
AB7
A
354 356Right-handed 310
Helix 17
AB8
A
357 370Right-handed alpha
Helix 18
AB9
A
370 383Right-handed alpha
Helix 19
AC1
A
406 425Right-handed alpha
Helix 20
AC2
A
433 445Right-handed alpha
Helix 21
AC3
A
448 454Right-handed alpha
Helix 22
AC4
A
555 567Right-handed alpha
Helix 23
AC5
A
571 581Right-handed alpha
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There are 3 sheets in PDB entry 6B41. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
78 79anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
182 186anti-parallel
Strand 3
A
174 177anti-parallel
Strand 4
A
228 229anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 457first strand
Strand 2
A
550 551parallel
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