Analysis of interatomic Contacts of Structural Units in PDB entry:
6B45

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6B45 entry

There are 10 chains in PDB entry 6B45 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 11	ASP 434
B	VAL 3	VAL 322
C	LEU 6	GLU 338
D	LEU 6	GLU 338
E	ILE 5	GLU 338
F	ILE 5	ALA 339
G	LEU 6	GLU 338
H	LEU 6	GLU 338
L	MET -1	PHE 187
M	C 1	G 60

There are 70 helices in PDB entry 6B45. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	24	Right-handed alpha
Helix 2	AA2	A	35	45	Right-handed alpha
Helix 3	AA3	A	51	60	Right-handed alpha
Helix 4	AA4	A	70	74	Right-handed 310
Helix 5	AA5	A	139	144	Right-handed alpha
Helix 6	AA6	A	148	161	Right-handed alpha
Helix 7	AA7	A	196	211	Right-handed alpha
Helix 8	AA8	A	213	224	Right-handed alpha
Helix 9	AA9	A	294	306	Right-handed alpha
Helix 10	AB1	A	322	341	Right-handed alpha
Helix 11	AB2	A	354	360	Right-handed alpha
Helix 12	AB3	A	385	399	Right-handed alpha
Helix 13	AB4	A	411	429	Right-handed alpha
Helix 14	AB5	A	430	432	Right-handed 310
Helix 15	AB6	B	33	53	Right-handed alpha
Helix 16	AB7	B	122	135	Right-handed alpha
Helix 17	AB8	B	148	152	Right-handed 310
Helix 18	AB9	B	165	178	Right-handed alpha
Helix 19	AC1	B	189	200	Right-handed alpha
Helix 20	AC2	B	210	214	Right-handed 310
Helix 21	AC3	B	291	295	Right-handed 310
Helix 22	AC4	B	297	301	Right-handed 310
Helix 23	AC5	C	114	129	Right-handed alpha
Helix 24	AC6	C	131	144	Right-handed alpha
Helix 25	AC7	C	191	205	Right-handed alpha
Helix 26	AC8	C	256	263	Right-handed alpha
Helix 27	AC9	C	303	313	Right-handed alpha
Helix 28	AD1	C	319	329	Right-handed alpha
Helix 29	AD2	D	32	36	Right-handed 310
Helix 30	AD3	D	63	68	Right-handed alpha
Helix 31	AD4	D	114	129	Right-handed alpha
Helix 32	AD5	D	133	144	Right-handed alpha
Helix 33	AD6	D	192	204	Right-handed alpha
Helix 34	AD7	D	256	263	Right-handed alpha
Helix 35	AD8	D	303	313	Right-handed alpha
Helix 36	AD9	D	324	332	Right-handed alpha
Helix 37	AE1	E	63	70	Right-handed alpha
Helix 38	AE2	E	111	129	Right-handed alpha
Helix 39	AE3	E	133	144	Right-handed alpha
Helix 40	AE4	E	192	203	Right-handed alpha
Helix 41	AE5	E	256	263	Right-handed alpha
Helix 42	AE6	E	303	313	Right-handed alpha
Helix 43	AE7	E	319	333	Right-handed alpha
Helix 44	AE8	F	32	36	Right-handed 310
Helix 45	AE9	F	112	129	Right-handed alpha
Helix 46	AF1	F	131	144	Right-handed alpha
Helix 47	AF2	F	191	205	Right-handed alpha
Helix 48	AF3	F	256	265	Right-handed alpha
Helix 49	AF4	F	303	313	Right-handed alpha
Helix 50	AF5	F	322	333	Right-handed alpha
Helix 51	AF6	G	32	36	Right-handed 310
Helix 52	AF7	G	66	71	Right-handed alpha
Helix 53	AF8	G	111	129	Right-handed alpha
Helix 54	AF9	G	131	140	Right-handed alpha
Helix 55	AG1	G	191	205	Right-handed alpha
Helix 56	AG2	G	258	263	Right-handed alpha
Helix 57	AG3	G	303	308	Right-handed alpha
Helix 58	AG4	G	322	333	Right-handed alpha
Helix 59	AG5	H	32	36	Right-handed 310
Helix 60	AG6	H	65	72	Right-handed alpha
Helix 61	AG7	H	113	129	Right-handed alpha
Helix 62	AG8	H	131	140	Right-handed alpha
Helix 63	AG9	H	192	204	Right-handed alpha
Helix 64	AH1	H	256	263	Right-handed alpha
Helix 65	AH2	H	303	313	Right-handed alpha
Helix 66	AH3	H	319	333	Right-handed alpha
Helix 67	AH4	L	16	32	Right-handed alpha
Helix 68	AH5	L	73	77	Right-handed 310
Helix 69	AH6	L	111	119	Right-handed alpha
Helix 70	AH7	L	123	130	Right-handed alpha

There are 30 sheets in PDB entry 6B45. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	69	first strand
Strand 2	A	194	195	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	181	first strand
Strand 2	A	187	192	anti-parallel
Strand 3	B	277	290	parallel
Strand 4	B	185	188	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	181	first strand
Strand 2	A	187	192	anti-parallel
Strand 3	B	277	290	parallel
Strand 4	B	250	256	anti-parallel
Strand 5	B	313	314	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	241	first strand
Strand 2	A	262	264	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	16	first strand
Strand 2	B	103	107	anti-parallel
Strand 3	B	66	68	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	80	81	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	20	first strand
Strand 2	C	90	98	anti-parallel
Strand 3	C	210	215	anti-parallel
Strand 4	C	160	161	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	28	first strand
Strand 2	C	90	98	anti-parallel
Strand 3	C	210	215	anti-parallel
Strand 4	C	164	165	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	268	first strand
Strand 2	C	280	281	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	336	337	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	20	first strand
Strand 2	D	90	99	anti-parallel
Strand 3	D	209	218	anti-parallel
Strand 4	D	157	165	anti-parallel
Strand 5	D	173	175	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	20	first strand
Strand 2	D	90	99	anti-parallel
Strand 3	D	23	26	anti-parallel
Strand 4	D	254	255	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	49	first strand
Strand 2	D	77	83	anti-parallel
Strand 3	D	224	225	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	287	288	first strand
Strand 2	D	293	294	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	20	first strand
Strand 2	E	90	98	anti-parallel
Strand 3	E	24	26	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	20	first strand
Strand 2	E	90	98	anti-parallel
Strand 3	E	210	218	anti-parallel
Strand 4	E	159	164	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	49	first strand
Strand 2	E	77	81	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	248	249	first strand
Strand 2	E	252	253	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	266	268	first strand
Strand 2	E	280	281	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	13	first strand
Strand 2	F	335	337	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	170	175	first strand
Strand 2	F	158	165	anti-parallel
Strand 3	F	209	217	anti-parallel
Strand 4	F	91	99	anti-parallel
Strand 5	F	23	26	anti-parallel
Strand 6	F	252	255	anti-parallel
Strand 7	F	248	249	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	51	first strand
Strand 2	F	75	81	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	13	first strand
Strand 2	G	335	336	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	20	first strand
Strand 2	G	90	99	anti-parallel
Strand 3	G	209	218	anti-parallel
Strand 4	G	159	165	anti-parallel
Strand 5	G	173	177	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	20	first strand
Strand 2	G	90	99	anti-parallel
Strand 3	G	23	28	anti-parallel
Strand 4	G	252	255	anti-parallel
Strand 5	G	248	249	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	50	first strand
Strand 2	G	76	81	anti-parallel
Strand 3	G	242	244	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	13	first strand
Strand 2	H	335	336	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	24	26	first strand
Strand 2	H	92	99	anti-parallel
Strand 3	H	209	217	anti-parallel
Strand 4	H	158	165	anti-parallel
Strand 5	H	170	175	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	46	first strand
Strand 2	H	80	81	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	50	first strand
Strand 2	H	76	77	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6B45

Analysis of interatomic Contacts of Structural Units in PDB entry:
6B45