Analysis of interatomic Contacts of Structural Units in PDB entry:
6B48

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6B48 entry

There are 9 chains in PDB entry 6B48 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 11	ASP 434
B	VAL 3	VAL 322
C	LEU 6	GLU 338
D	LEU 6	GLU 338
E	ILE 5	GLU 338
F	ILE 5	ALA 339
G	LEU 6	GLU 338
H	LEU 6	GLU 338
K	SER 1	SER 1

There are 74 helices in PDB entry 6B48. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	27	Right-handed alpha
Helix 2	AA2	A	33	48	Right-handed alpha
Helix 3	AA3	A	50	58	Right-handed alpha
Helix 4	AA4	A	96	100	Right-handed 310
Helix 5	AA5	A	114	123	Right-handed alpha
Helix 6	AA6	A	138	143	Right-handed alpha
Helix 7	AA7	A	149	161	Right-handed alpha
Helix 8	AA8	A	195	211	Right-handed alpha
Helix 9	AA9	A	213	222	Right-handed alpha
Helix 10	AB1	A	247	251	Right-handed 310
Helix 11	AB2	A	294	307	Right-handed alpha
Helix 12	AB3	A	314	317	Right-handed 310
Helix 13	AB4	A	318	342	Right-handed alpha
Helix 14	AB5	A	355	360	Right-handed alpha
Helix 15	AB6	A	386	399	Right-handed alpha
Helix 16	AB7	A	408	430	Right-handed alpha
Helix 17	AB8	B	33	48	Right-handed alpha
Helix 18	AB9	B	122	135	Right-handed alpha
Helix 19	AC1	B	165	180	Right-handed alpha
Helix 20	AC2	B	190	201	Right-handed alpha
Helix 21	AC3	B	206	213	Right-handed alpha
Helix 22	AC4	C	112	129	Right-handed alpha
Helix 23	AC5	C	131	142	Right-handed alpha
Helix 24	AC6	C	189	204	Right-handed alpha
Helix 25	AC7	C	257	264	Right-handed alpha
Helix 26	AC8	C	303	313	Right-handed alpha
Helix 27	AC9	C	319	332	Right-handed alpha
Helix 28	AD1	D	31	35	Right-handed 310
Helix 29	AD2	D	63	70	Right-handed alpha
Helix 30	AD3	D	111	129	Right-handed alpha
Helix 31	AD4	D	131	144	Right-handed alpha
Helix 32	AD5	D	190	204	Right-handed alpha
Helix 33	AD6	D	256	261	Right-handed alpha
Helix 34	AD7	D	274	278	Right-handed 310
Helix 35	AD8	D	303	312	Right-handed alpha
Helix 36	AD9	D	319	332	Right-handed alpha
Helix 37	AE1	E	32	36	Right-handed 310
Helix 38	AE2	E	63	73	Right-handed alpha
Helix 39	AE3	E	112	129	Right-handed alpha
Helix 40	AE4	E	131	144	Right-handed alpha
Helix 41	AE5	E	190	204	Right-handed alpha
Helix 42	AE6	E	256	264	Right-handed alpha
Helix 43	AE7	E	304	312	Right-handed alpha
Helix 44	AE8	E	319	332	Right-handed alpha
Helix 45	AE9	F	32	36	Right-handed 310
Helix 46	AF1	F	63	71	Right-handed alpha
Helix 47	AF2	F	113	129	Right-handed alpha
Helix 48	AF3	F	132	144	Right-handed alpha
Helix 49	AF4	F	190	204	Right-handed alpha
Helix 50	AF5	F	256	264	Right-handed alpha
Helix 51	AF6	F	304	312	Right-handed alpha
Helix 52	AF7	F	319	332	Right-handed alpha
Helix 53	AF8	G	63	72	Right-handed alpha
Helix 54	AF9	G	112	129	Right-handed alpha
Helix 55	AG1	G	131	144	Right-handed alpha
Helix 56	AG2	G	190	204	Right-handed alpha
Helix 57	AG3	G	256	265	Right-handed alpha
Helix 58	AG4	G	304	312	Right-handed alpha
Helix 59	AG5	G	319	332	Right-handed alpha
Helix 60	AG6	H	32	36	Right-handed 310
Helix 61	AG7	H	63	72	Right-handed alpha
Helix 62	AG8	H	111	129	Right-handed alpha
Helix 63	AG9	H	131	144	Right-handed alpha
Helix 64	AH1	H	190	203	Right-handed alpha
Helix 65	AH2	H	256	265	Right-handed alpha
Helix 66	AH3	H	303	312	Right-handed alpha
Helix 67	AH4	H	319	332	Right-handed alpha
Helix 68	AH5	K	60	66	Right-handed alpha
Helix 69	AH6	K	85	95	Right-handed alpha
Helix 70	AH7	L	16	31	Right-handed alpha
Helix 71	AH8	L	64	69	Right-handed alpha
Helix 72	AH9	L	78	82	Right-handed 310
Helix 73	AI1	L	108	119	Right-handed alpha
Helix 74	AI2	L	123	130	Right-handed alpha

There are 40 sheets in PDB entry 6B48. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	192	first strand
Strand 2	B	277	282	parallel
Strand 3	B	254	257	anti-parallel
Strand 4	B	313	315	anti-parallel
Strand 5	B	306	308	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	242	first strand
Strand 2	A	261	263	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	103	110	anti-parallel
Strand 3	B	11	20	anti-parallel
Strand 4	B	143	144	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	287	289	anti-parallel
Strand 3	B	247	249	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	334	336	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	175	first strand
Strand 2	C	160	162	anti-parallel
Strand 3	C	213	218	anti-parallel
Strand 4	C	90	95	anti-parallel
Strand 5	C	23	28	anti-parallel
Strand 6	C	254	255	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	13	first strand
Strand 2	D	335	336	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	20	first strand
Strand 2	D	90	99	anti-parallel
Strand 3	D	209	218	anti-parallel
Strand 4	D	159	160	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	26	first strand
Strand 2	D	90	99	anti-parallel
Strand 3	D	209	218	anti-parallel
Strand 4	D	163	164	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	51	first strand
Strand 2	D	75	80	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	83	first strand
Strand 2	D	224	225	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	249	first strand
Strand 2	D	252	253	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	287	288	first strand
Strand 2	D	293	294	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	14	first strand
Strand 2	E	334	336	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	20	first strand
Strand 2	E	92	99	anti-parallel
Strand 3	E	209	216	anti-parallel
Strand 4	E	159	162	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	20	first strand
Strand 2	E	92	99	anti-parallel
Strand 3	E	23	26	anti-parallel
Strand 4	E	252	255	anti-parallel
Strand 5	E	248	249	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	50	first strand
Strand 2	E	76	82	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	229	230	first strand
Strand 2	E	245	246	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	266	268	first strand
Strand 2	E	280	281	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	287	288	first strand
Strand 2	E	293	294	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	14	first strand
Strand 2	F	334	336	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	20	first strand
Strand 2	F	92	99	anti-parallel
Strand 3	F	209	217	anti-parallel
Strand 4	F	158	165	anti-parallel
Strand 5	F	170	175	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	20	first strand
Strand 2	F	92	99	anti-parallel
Strand 3	F	23	26	anti-parallel
Strand 4	F	252	255	anti-parallel
Strand 5	F	248	249	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	51	first strand
Strand 2	F	75	80	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	266	268	first strand
Strand 2	F	280	281	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	14	first strand
Strand 2	G	334	336	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	20	first strand
Strand 2	G	92	99	anti-parallel
Strand 3	G	24	26	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	20	first strand
Strand 2	G	92	99	anti-parallel
Strand 3	G	209	217	anti-parallel
Strand 4	G	158	165	anti-parallel
Strand 5	G	170	175	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	50	first strand
Strand 2	G	76	80	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	229	230	first strand
Strand 2	G	245	246	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	248	249	first strand
Strand 2	G	252	253	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	266	268	first strand
Strand 2	G	280	281	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	108	109	first strand
Strand 2	H	12	14	anti-parallel
Strand 3	H	334	336	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	170	175	first strand
Strand 2	H	158	165	anti-parallel
Strand 3	H	209	217	anti-parallel
Strand 4	H	92	99	anti-parallel
Strand 5	H	23	26	anti-parallel
Strand 6	H	254	255	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	51	first strand
Strand 2	H	75	77	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	266	268	first strand
Strand 2	H	280	281	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	6	8	first strand
Strand 2	K	24	26	anti-parallel
Strand 3	K	31	32	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	13	15	first strand
Strand 2	K	18	21	anti-parallel
Strand 3	K	36	37	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	39	40	first strand
Strand 2	K	46	48	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6B48

Analysis of interatomic Contacts of Structural Units in PDB entry:
6B48