Analysis of interatomic Contacts of Structural Units in PDB entry:
6B4F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B4F entry

There are 4 chains in PDB entry 6B4F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 384SER 698
A
 GLN 383SER 698
C
 ILE 379VAL 423
D
 ILE 379VAL 423
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 6B4F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
384 404Right-handed alpha
Helix 2
AA2
B
412 425Right-handed alpha
Helix 3
AA3
B
427 432Right-handed alpha
Helix 4
AA4
B
437 454Right-handed alpha
Helix 5
AA5
B
469 491Right-handed alpha
Helix 6
AA6
B
495 497Right-handed 310
Helix 7
AA7
B
498 513Right-handed alpha
Helix 8
AA8
B
513 528Right-handed alpha
Helix 9
AA9
B
529 532Right-handed 310
Helix 10
AB1
B
543 551Right-handed alpha
Helix 11
AB2
B
563 581Right-handed alpha
Helix 12
AB3
B
598 610Right-handed alpha
Helix 13
AB4
B
616 637Right-handed alpha
Helix 14
AB5
B
637 649Right-handed alpha
Helix 15
AB6
B
651 660Right-handed alpha
Helix 16
AB7
B
661 664Right-handed 310
Helix 17
AB8
B
665 682Right-handed alpha
Helix 18
AB9
B
692 698Right-handed alpha
Helix 19
AC1
A
384 404Right-handed alpha
Helix 20
AC2
A
405 408Right-handed 310
Helix 21
AC3
A
413 425Right-handed alpha
Helix 22
AC4
A
427 432Right-handed alpha
Helix 23
AC5
A
433 436Right-handed 310
Helix 24
AC6
A
437 454Right-handed alpha
Helix 25
AC7
A
469 491Right-handed alpha
Helix 26
AC8
A
495 497Right-handed 310
Helix 27
AC9
A
498 513Right-handed alpha
Helix 28
AD1
A
513 528Right-handed alpha
Helix 29
AD2
A
529 532Right-handed 310
Helix 30
AD3
A
543 551Right-handed alpha
Helix 31
AD4
A
563 581Right-handed alpha
Helix 32
AD5
A
598 610Right-handed alpha
Helix 33
AD6
A
616 637Right-handed alpha
Helix 34
AD7
A
637 649Right-handed alpha
Helix 35
AD8
A
651 660Right-handed alpha
Helix 36
AD9
A
661 664Right-handed 310
Helix 37
AE1
A
665 682Right-handed alpha
Helix 38
AE2
A
692 698Right-handed alpha
Helix 39
AE3
C
394 403Right-handed alpha
Helix 40
AE4
C
417 421Right-handed 310
Helix 41
AE5
D
394 403Right-handed alpha
Helix 42
AE6
D
417 421Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 6B4F. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 458first strand
Strand 2
B
463 464anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 458first strand
Strand 2
A
463 464anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il