Analysis of interatomic Contacts of Structural Units in PDB entry:
6B4H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B4H entry

There are 4 chains in PDB entry 6B4H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 ASP 494PHE 557
A
 GLY 212GLY 529
B
 THR 496PHE 557
C
 GLY 212GLY 529
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 6B4H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
510 514Right-handed 310
Helix 2
AA2
D
517 522Right-handed 310
Helix 3
AA3
D
523 537Right-handed alpha
Helix 4
AA4
D
549 553Right-handed 310
Helix 5
AA5
A
213 236Right-handed alpha
Helix 6
AA6
A
238 258Right-handed alpha
Helix 7
AA7
A
263 284Right-handed alpha
Helix 8
AA8
A
292 297Right-handed 310
Helix 9
AA9
A
316 336Right-handed alpha
Helix 10
AB1
A
340 342Right-handed 310
Helix 11
AB2
A
343 356Right-handed alpha
Helix 12
AB3
A
357 361Right-handed 310
Helix 13
AB4
A
368 379Right-handed alpha
Helix 14
AB5
A
380 384Right-handed 310
Helix 15
AB6
A
391 398Right-handed alpha
Helix 16
AB7
A
409 429Right-handed alpha
Helix 17
AB8
A
443 455Right-handed alpha
Helix 18
AB9
A
457 461Right-handed 310
Helix 19
AC1
A
462 474Right-handed alpha
Helix 20
AC2
A
476 485Right-handed alpha
Helix 21
AC3
A
485 497Right-handed alpha
Helix 22
AC4
A
497 502Right-handed alpha
Helix 23
AC5
A
507 523Right-handed alpha
Helix 24
AC6
B
510 514Right-handed 310
Helix 25
AC7
B
517 521Right-handed 310
Helix 26
AC8
B
523 530Right-handed alpha
Helix 27
AC9
B
530 537Right-handed alpha
Helix 28
AD1
B
549 553Right-handed 310
Helix 29
AD2
C
213 236Right-handed alpha
Helix 30
AD3
C
238 258Right-handed alpha
Helix 31
AD4
C
263 284Right-handed alpha
Helix 32
AD5
C
292 297Right-handed 310
Helix 33
AD6
C
316 336Right-handed alpha
Helix 34
AD7
C
340 342Right-handed 310
Helix 35
AD8
C
343 356Right-handed alpha
Helix 36
AD9
C
357 361Right-handed 310
Helix 37
AE1
C
368 379Right-handed alpha
Helix 38
AE2
C
380 384Right-handed 310
Helix 39
AE3
C
391 398Right-handed alpha
Helix 40
AE4
C
409 429Right-handed alpha
Helix 41
AE5
C
443 455Right-handed alpha
Helix 42
AE6
C
457 461Right-handed 310
Helix 43
AE7
C
462 474Right-handed alpha
Helix 44
AE8
C
476 497Right-handed alpha
Helix 45
AE9
C
497 502Right-handed alpha
Helix 46
AF1
C
507 523Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6B4H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
314 315anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 403first strand
Strand 2
A
406 407anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
290 291first strand
Strand 2
C
314 315anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
402 403first strand
Strand 2
C
406 407anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il