Analysis of interatomic Contacts of Structural Units in PDB entry:
6B4R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6B4R entry

There are 6 chains in PDB entry 6B4R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 301
A	THR 303	LEU 497
B	THR 3	LEU 497
C	THR 3	VAL 301
C	THR 303	LEU 497
D	THR 3	LEU 497

There are 84 helices in PDB entry 6B4R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	16	Right-handed alpha
Helix 2	AA2	A	55	73	Right-handed alpha
Helix 3	AA3	A	79	97	Right-handed alpha
Helix 4	AA4	A	97	110	Right-handed alpha
Helix 5	AA5	A	112	119	Right-handed alpha
Helix 6	AA6	A	119	134	Right-handed alpha
Helix 7	AA7	A	135	138	Right-handed 310
Helix 8	AA8	A	169	184	Right-handed alpha
Helix 9	AA9	A	197	211	Right-handed alpha
Helix 10	AB1	A	226	234	Right-handed alpha
Helix 11	AB2	A	245	259	Right-handed alpha
Helix 12	AB3	A	282	296	Right-handed alpha
Helix 13	AB4	A	297	300	Right-handed 310
Helix 14	AB5	A	314	327	Right-handed alpha
Helix 15	AB6	A	346	363	Right-handed alpha
Helix 16	AB7	A	375	379	Right-handed 310
Helix 17	AB8	A	395	400	Right-handed alpha
Helix 18	AB9	A	414	424	Right-handed alpha
Helix 19	AC1	A	437	448	Right-handed alpha
Helix 20	AC2	A	470	472	Right-handed 310
Helix 21	AC3	A	480	486	Right-handed 310
Helix 22	AC4	B	5	15	Right-handed alpha
Helix 23	AC5	B	55	73	Right-handed alpha
Helix 24	AC6	B	79	97	Right-handed alpha
Helix 25	AC7	B	97	110	Right-handed alpha
Helix 26	AC8	B	112	119	Right-handed alpha
Helix 27	AC9	B	119	135	Right-handed alpha
Helix 28	AD1	B	136	138	Right-handed 310
Helix 29	AD2	B	169	184	Right-handed alpha
Helix 30	AD3	B	197	211	Right-handed alpha
Helix 31	AD4	B	226	234	Right-handed alpha
Helix 32	AD5	B	245	259	Right-handed alpha
Helix 33	AD6	B	282	296	Right-handed alpha
Helix 34	AD7	B	297	300	Right-handed 310
Helix 35	AD8	B	312	327	Right-handed alpha
Helix 36	AD9	B	346	364	Right-handed alpha
Helix 37	AE1	B	375	379	Right-handed 310
Helix 38	AE2	B	395	400	Right-handed alpha
Helix 39	AE3	B	414	424	Right-handed alpha
Helix 40	AE4	B	437	448	Right-handed alpha
Helix 41	AE5	B	470	474	Right-handed 310
Helix 42	AE6	B	481	486	Right-handed 310
Helix 43	AE7	C	5	15	Right-handed alpha
Helix 44	AE8	C	55	73	Right-handed alpha
Helix 45	AE9	C	79	97	Right-handed alpha
Helix 46	AF1	C	97	110	Right-handed alpha
Helix 47	AF2	C	112	119	Right-handed alpha
Helix 48	AF3	C	119	135	Right-handed alpha
Helix 49	AF4	C	136	138	Right-handed 310
Helix 50	AF5	C	169	184	Right-handed alpha
Helix 51	AF6	C	197	211	Right-handed alpha
Helix 52	AF7	C	226	234	Right-handed alpha
Helix 53	AF8	C	245	259	Right-handed alpha
Helix 54	AF9	C	282	296	Right-handed alpha
Helix 55	AG1	C	297	300	Right-handed 310
Helix 56	AG2	C	314	327	Right-handed alpha
Helix 57	AG3	C	346	363	Right-handed alpha
Helix 58	AG4	C	375	379	Right-handed 310
Helix 59	AG5	C	395	400	Right-handed alpha
Helix 60	AG6	C	414	424	Right-handed alpha
Helix 61	AG7	C	437	448	Right-handed alpha
Helix 62	AG8	C	470	474	Right-handed 310
Helix 63	AG9	C	481	486	Right-handed 310
Helix 64	AH1	D	5	15	Right-handed alpha
Helix 65	AH2	D	55	73	Right-handed alpha
Helix 66	AH3	D	79	97	Right-handed alpha
Helix 67	AH4	D	97	110	Right-handed alpha
Helix 68	AH5	D	112	119	Right-handed alpha
Helix 69	AH6	D	119	134	Right-handed alpha
Helix 70	AH7	D	135	138	Right-handed 310
Helix 71	AH8	D	169	184	Right-handed alpha
Helix 72	AH9	D	197	211	Right-handed alpha
Helix 73	AI1	D	226	234	Right-handed alpha
Helix 74	AI2	D	245	259	Right-handed alpha
Helix 75	AI3	D	282	296	Right-handed alpha
Helix 76	AI4	D	297	300	Right-handed 310
Helix 77	AI5	D	314	326	Right-handed alpha
Helix 78	AI6	D	327	329	Right-handed 310
Helix 79	AI7	D	346	363	Right-handed alpha
Helix 80	AI8	D	395	400	Right-handed alpha
Helix 81	AI9	D	414	424	Right-handed alpha
Helix 82	AJ1	D	437	448	Right-handed alpha
Helix 83	AJ2	D	470	474	Right-handed 310
Helix 84	AJ3	D	481	486	Right-handed 310

There are 18 sheets in PDB entry 6B4R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	24	first strand
Strand 2	A	27	29	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	47	52	anti-parallel

Back to list of sheets
Back to top of page

There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	369	first strand
Strand 2	B	386	389	anti-parallel
Strand 3	B	406	412	parallel
Strand 4	B	307	311	parallel
Strand 5	B	273	276	parallel
Strand 6	B	430	434	parallel
Strand 7	B	452	455	parallel
Strand 8	A	488	496	parallel
Strand 9	A	149	157	anti-parallel
Strand 10	A	140	142	anti-parallel
Strand 11	C	140	142	anti-parallel
Strand 12	C	149	157	anti-parallel
Strand 13	C	488	496	anti-parallel
Strand 14	D	452	455	parallel
Strand 15	D	430	434	parallel
Strand 16	D	273	276	parallel
Strand 17	D	307	311	parallel
Strand 18	D	406	412	parallel
Strand 19	D	386	389	parallel
Strand 20	D	366	369	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	219	first strand
Strand 2	A	187	191	parallel
Strand 3	A	160	164	parallel
Strand 4	A	239	243	parallel
Strand 5	A	263	267	parallel
Strand 6	A	474	475	anti-parallel

Back to list of sheets
Back to top of page

There are 20 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	369	first strand
Strand 2	A	386	389	anti-parallel
Strand 3	A	406	412	parallel
Strand 4	A	307	311	parallel
Strand 5	A	273	276	parallel
Strand 6	A	430	434	parallel
Strand 7	A	452	455	parallel
Strand 8	B	488	496	parallel
Strand 9	B	149	157	anti-parallel
Strand 10	B	140	142	anti-parallel
Strand 11	D	140	142	anti-parallel
Strand 12	D	149	157	anti-parallel
Strand 13	D	488	496	anti-parallel
Strand 14	C	452	455	parallel
Strand 15	C	430	434	parallel
Strand 16	C	273	276	parallel
Strand 17	C	307	311	parallel
Strand 18	C	406	412	parallel
Strand 19	C	386	389	parallel
Strand 20	C	366	369	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	A	382	383	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	24	first strand
Strand 2	B	27	29	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	40	first strand
Strand 2	B	47	52	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	219	first strand
Strand 2	B	187	191	parallel
Strand 3	B	160	164	parallel
Strand 4	B	239	243	parallel
Strand 5	B	263	267	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	374	first strand
Strand 2	B	382	383	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	24	first strand
Strand 2	C	27	29	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	40	first strand
Strand 2	C	47	52	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	219	first strand
Strand 2	C	187	192	parallel
Strand 3	C	160	165	parallel
Strand 4	C	239	243	parallel
Strand 5	C	263	267	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	374	first strand
Strand 2	C	382	383	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	24	first strand
Strand 2	D	27	29	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	40	first strand
Strand 2	D	47	52	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	219	first strand
Strand 2	D	187	191	parallel
Strand 3	D	160	164	parallel
Strand 4	D	239	243	parallel
Strand 5	D	263	267	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	373	374	first strand
Strand 2	D	382	383	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6B4R

Analysis of interatomic Contacts of Structural Units in PDB entry:
6B4R