Analysis of interatomic Contacts of Structural Units in PDB entry:
6B5Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B5Q entry

There are 2 chains in PDB entry 6B5Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 62ILE 251
B
 ARG 62ILE 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 6B5Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 71Right-handed alpha
Helix 2
AA2
A
82 93Right-handed alpha
Helix 3
AA3
A
99 109Right-handed alpha
Helix 4
AA4
A
119 129Right-handed alpha
Helix 5
AA5
A
133 148Right-handed alpha
Helix 6
AA6
A
150 166Right-handed alpha
Helix 7
AA7
A
175 186Right-handed alpha
Helix 8
AA8
A
192 203Right-handed alpha
Helix 9
AA9
A
209 223Right-handed alpha
Helix 10
AB1
A
237 248Right-handed alpha
Helix 11
AB2
B
63 71Right-handed alpha
Helix 12
AB3
B
82 93Right-handed alpha
Helix 13
AB4
B
99 109Right-handed alpha
Helix 14
AB5
B
118 129Right-handed alpha
Helix 15
AB6
B
133 140Right-handed alpha
Helix 16
AB7
B
140 148Right-handed alpha
Helix 17
AB8
B
152 166Right-handed alpha
Helix 18
AB9
B
175 186Right-handed alpha
Helix 19
AC1
B
192 201Right-handed alpha
Helix 20
AC2
B
209 223Right-handed alpha
Helix 21
AC3
B
237 248Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6B5Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
207 208anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 174first strand
Strand 2
B
207 208anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il