Analysis of interatomic Contacts of Structural Units in PDB entry:
6B67

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6B67 entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 6B67 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	VAL 297
B	GLY 2	VAL 297
C	GLY 2	VAL 297
D	MET 1	MET 1
D	ILE 3	ILE 3
D	VAL 5	ALA 6
E	MET 1	MET 1
E	ILE 3	ILE 3
E	VAL 5	ALA 6
F	MET 1	MET 1
F	ILE 3	ILE 3
F	VAL 5	ALA 6

There are 26 helices in PDB entry 6B67. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	82	Right-handed alpha
Helix 2	AA2	A	82	87	Right-handed alpha
Helix 3	AA3	A	93	119	Right-handed alpha
Helix 4	AA4	A	168	178	Right-handed alpha
Helix 5	AA5	A	200	203	Right-handed 310
Helix 6	AA6	A	209	213	Right-handed 310
Helix 7	AA7	A	238	243	Right-handed alpha
Helix 8	AA8	A	246	258	Right-handed alpha
Helix 9	AA9	A	263	278	Right-handed alpha
Helix 10	AB1	B	65	82	Right-handed alpha
Helix 11	AB2	B	93	119	Right-handed alpha
Helix 12	AB3	B	168	178	Right-handed alpha
Helix 13	AB4	B	200	204	Right-handed 310
Helix 14	AB5	B	209	213	Right-handed 310
Helix 15	AB6	B	238	243	Right-handed alpha
Helix 16	AB7	B	246	261	Right-handed alpha
Helix 17	AB8	B	263	278	Right-handed alpha
Helix 18	AB9	C	65	81	Right-handed alpha
Helix 19	AC1	C	86	90	Right-handed 310
Helix 20	AC2	C	93	118	Right-handed alpha
Helix 21	AC3	C	168	178	Right-handed alpha
Helix 22	AC4	C	200	203	Right-handed 310
Helix 23	AC5	C	209	213	Right-handed 310
Helix 24	AC6	C	238	243	Right-handed alpha
Helix 25	AC7	C	246	258	Right-handed alpha
Helix 26	AC8	C	263	278	Right-handed alpha

There are 12 sheets in PDB entry 6B67. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	160	first strand
Strand 2	A	148	153	anti-parallel
Strand 3	A	231	237	anti-parallel
Strand 4	A	284	290	anti-parallel
Strand 5	A	22	33	anti-parallel
Strand 6	A	4	19	anti-parallel
Strand 7	B	4	19	anti-parallel
Strand 8	B	22	33	anti-parallel
Strand 9	B	284	290	anti-parallel
Strand 10	B	231	237	anti-parallel
Strand 11	B	148	153	anti-parallel
Strand 12	B	156	160	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	44	first strand
Strand 2	A	54	62	anti-parallel
Strand 3	A	126	127	anti-parallel
Strand 4	A	197	198	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	44	first strand
Strand 2	A	54	62	anti-parallel
Strand 3	A	129	134	anti-parallel
Strand 4	A	138	144	anti-parallel
Strand 5	A	220	225	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	186	187	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	46	first strand
Strand 2	B	50	62	anti-parallel
Strand 3	B	126	127	anti-parallel
Strand 4	B	197	198	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	46	first strand
Strand 2	B	50	62	anti-parallel
Strand 3	B	129	134	anti-parallel
Strand 4	B	138	144	anti-parallel
Strand 5	B	220	225	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	183	first strand
Strand 2	B	186	187	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	9	first strand
Strand 2	C	31	33	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	19	first strand
Strand 2	C	22	29	anti-parallel
Strand 3	C	284	290	anti-parallel
Strand 4	C	231	237	anti-parallel
Strand 5	C	148	153	anti-parallel
Strand 6	C	156	160	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	44	first strand
Strand 2	C	54	62	anti-parallel
Strand 3	C	126	127	anti-parallel
Strand 4	C	197	198	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	44	first strand
Strand 2	C	54	62	anti-parallel
Strand 3	C	129	134	anti-parallel
Strand 4	C	138	144	anti-parallel
Strand 5	C	220	225	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	183	first strand
Strand 2	C	186	187	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6B67

Analysis of interatomic Contacts of Structural Units in PDB entry:
6B67