Analysis of interatomic Contacts of Structural Units in PDB entry:
6B6U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B6U entry

There are 2 chains in PDB entry 6B6U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 7PRO 531
B
 ILE 13SER 127
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 6B6U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 12Right-handed 310
Helix 2
AA2
A
17 22Right-handed alpha
Helix 3
AA3
A
25 32Right-handed alpha
Helix 4
AA4
A
57 68Right-handed alpha
Helix 5
AA5
A
80 97Right-handed alpha
Helix 6
AA6
A
145 149Right-handed 310
Helix 7
AA7
A
163 168Right-handed alpha
Helix 8
AA8
A
222 235Right-handed alpha
Helix 9
AA9
A
247 258Right-handed alpha
Helix 10
AB1
A
273 279Right-handed alpha
Helix 11
AB2
A
279 287Right-handed alpha
Helix 12
AB3
A
294 301Right-handed alpha
Helix 13
AB4
A
302 304Right-handed 310
Helix 14
AB5
A
305 321Right-handed alpha
Helix 15
AB6
A
331 336Right-handed 310
Helix 16
AB7
A
341 355Right-handed alpha
Helix 17
AB8
A
362 367Right-handed alpha
Helix 18
AB9
A
370 389Right-handed alpha
Helix 19
AC1
A
390 401Right-handed alpha
Helix 20
AC2
A
407 424Right-handed alpha
Helix 21
AC3
A
435 443Right-handed alpha
Helix 22
AC4
A
456 463Right-handed alpha
Helix 23
AC5
A
464 466Right-handed 310
Helix 24
AC6
A
481 500Right-handed alpha
Helix 25
AC7
B
17 22Right-handed alpha
Helix 26
AC8
B
25 32Right-handed alpha
Helix 27
AC9
B
57 68Right-handed alpha
Helix 28
AD1
B
80 97Right-handed alpha
Helix 29
AD2
B
145 149Right-handed 310
Helix 30
AD3
B
163 168Right-handed alpha
Helix 31
AD4
B
222 235Right-handed alpha
Helix 32
AD5
B
247 259Right-handed alpha
Helix 33
AD6
B
273 279Right-handed alpha
Helix 34
AD7
B
279 287Right-handed alpha
Helix 35
AD8
B
294 301Right-handed alpha
Helix 36
AD9
B
302 304Right-handed 310
Helix 37
AE1
B
305 321Right-handed alpha
Helix 38
AE2
B
331 336Right-handed 310
Helix 39
AE3
B
341 355Right-handed alpha
Helix 40
AE4
B
362 367Right-handed alpha
Helix 41
AE5
B
370 389Right-handed alpha
Helix 42
AE6
B
390 402Right-handed alpha
Helix 43
AE7
B
407 423Right-handed alpha
Helix 44
AE8
B
435 443Right-handed alpha
Helix 45
AE9
B
456 463Right-handed alpha
Helix 46
AF1
B
464 466Right-handed 310
Helix 47
AF2
B
481 500Right-handed alpha
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There are 8 sheets in PDB entry 6B6U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
71 75parallel
Strand 3
A
109 113parallel
Strand 4
A
239 242parallel
Strand 5
A
266 271parallel
Strand 6
A
289 293parallel
Strand 7
A
324 327parallel
Strand 8
A
358 361parallel
Strand 9
A
46 50parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
208 210anti-parallel
Strand 3
A
173 176anti-parallel
Strand 4
A
181 188anti-parallel
Strand 5
A
192 199anti-parallel
Strand 6
A
139 143anti-parallel
Strand 7
A
156 158parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
201 203anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 473first strand
Strand 2
A
450 454parallel
Strand 3
A
428 431parallel
Strand 4
A
508 512parallel
Strand 5
A
525 529anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 50first strand
Strand 2
B
71 75parallel
Strand 3
B
109 113parallel
Strand 4
B
239 242parallel
Strand 5
B
266 271parallel
Strand 6
B
289 293parallel
Strand 7
B
324 327parallel
Strand 8
B
358 361parallel
Strand 9
B
46 50parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 120first strand
Strand 2
B
208 210anti-parallel
Strand 3
B
173 176anti-parallel
Strand 4
B
181 188anti-parallel
Strand 5
B
192 199anti-parallel
Strand 6
B
139 143anti-parallel
Strand 7
B
156 158parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 134first strand
Strand 2
B
201 203anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
469 473first strand
Strand 2
B
450 454parallel
Strand 3
B
428 431parallel
Strand 4
B
508 514parallel
Strand 5
B
522 529anti-parallel
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