Analysis of interatomic Contacts of Structural Units in PDB entry:
6B6V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B6V entry

There are 2 chains in PDB entry 6B6V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4THR 628
B
 SER 4THR 628
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 6B6V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 11Right-handed alpha
Helix 2
AA2
A
13 26Right-handed alpha
Helix 3
AA3
A
30 38Right-handed alpha
Helix 4
AA4
A
42 48Right-handed alpha
Helix 5
AA5
A
77 113Right-handed alpha
Helix 6
AA6
A
123 134Right-handed alpha
Helix 7
AA7
A
143 159Right-handed alpha
Helix 8
AA8
A
166 172Right-handed 310
Helix 9
AA9
A
173 184Right-handed alpha
Helix 10
AB1
A
189 201Right-handed alpha
Helix 11
AB2
A
208 225Right-handed alpha
Helix 12
AB3
A
226 240Right-handed alpha
Helix 13
AB4
A
250 254Right-handed 310
Helix 14
AB5
A
267 279Right-handed alpha
Helix 15
AB6
A
280 290Right-handed alpha
Helix 16
AB7
A
301 312Right-handed alpha
Helix 17
AB8
A
318 320Right-handed 310
Helix 18
AB9
A
321 328Right-handed alpha
Helix 19
AC1
A
343 351Right-handed alpha
Helix 20
AC2
A
377 394Right-handed alpha
Helix 21
AC3
A
395 396Right-handed 310
Helix 22
AC4
A
397 401Right-handed 310
Helix 23
AC5
A
415 423Right-handed alpha
Helix 24
AC6
A
427 436Right-handed alpha
Helix 25
AC7
A
456 469Right-handed alpha
Helix 26
AC8
A
478 486Right-handed alpha
Helix 27
AC9
A
490 497Right-handed 310
Helix 28
AD1
A
498 509Right-handed alpha
Helix 29
AD2
A
521 537Right-handed alpha
Helix 30
AD3
A
539 543Right-handed 310
Helix 31
AD4
A
554 567Right-handed alpha
Helix 32
AD5
A
582 591Right-handed alpha
Helix 33
AD6
A
593 598Right-handed alpha
Helix 34
AD7
A
606 625Right-handed alpha
Helix 35
AD8
B
5 9Right-handed alpha
Helix 36
AD9
B
13 27Right-handed alpha
Helix 37
AE1
B
30 38Right-handed alpha
Helix 38
AE2
B
42 48Right-handed alpha
Helix 39
AE3
B
77 113Right-handed alpha
Helix 40
AE4
B
123 135Right-handed alpha
Helix 41
AE5
B
143 159Right-handed alpha
Helix 42
AE6
B
166 172Right-handed 310
Helix 43
AE7
B
173 184Right-handed alpha
Helix 44
AE8
B
189 201Right-handed alpha
Helix 45
AE9
B
208 225Right-handed alpha
Helix 46
AF1
B
226 240Right-handed alpha
Helix 47
AF2
B
250 254Right-handed 310
Helix 48
AF3
B
267 278Right-handed alpha
Helix 49
AF4
B
280 290Right-handed alpha
Helix 50
AF5
B
301 312Right-handed alpha
Helix 51
AF6
B
318 320Right-handed 310
Helix 52
AF7
B
321 328Right-handed alpha
Helix 53
AF8
B
343 351Right-handed alpha
Helix 54
AF9
B
377 395Right-handed alpha
Helix 55
AG1
B
396 401Right-handed 310
Helix 56
AG2
B
415 423Right-handed alpha
Helix 57
AG3
B
427 436Right-handed alpha
Helix 58
AG4
B
456 469Right-handed alpha
Helix 59
AG5
B
478 486Right-handed alpha
Helix 60
AG6
B
490 497Right-handed 310
Helix 61
AG7
B
498 509Right-handed alpha
Helix 62
AG8
B
521 537Right-handed alpha
Helix 63
AG9
B
539 543Right-handed 310
Helix 64
AH1
B
554 567Right-handed alpha
Helix 65
AH2
B
582 591Right-handed alpha
Helix 66
AH3
B
593 598Right-handed alpha
Helix 67
AH4
B
606 625Right-handed alpha
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There are 8 sheets in PDB entry 6B6V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
59 60anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 249first strand
Strand 2
A
408 412anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 317first strand
Strand 2
A
295 300parallel
Strand 3
A
259 264parallel
Strand 4
A
333 336parallel
Strand 5
A
355 358parallel
Strand 6
A
369 370parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 517first strand
Strand 2
A
471 476parallel
Strand 3
A
441 445parallel
Strand 4
A
545 549parallel
Strand 5
A
571 573parallel
Strand 6
A
601 603parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
59 60anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 249first strand
Strand 2
B
408 412anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 317first strand
Strand 2
B
295 300parallel
Strand 3
B
259 264parallel
Strand 4
B
333 336parallel
Strand 5
B
355 358parallel
Strand 6
B
369 370parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
513 517first strand
Strand 2
B
471 476parallel
Strand 3
B
441 445parallel
Strand 4
B
545 549parallel
Strand 5
B
571 573parallel
Strand 6
B
601 603parallel
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