Analysis of interatomic Contacts of Structural Units in PDB entry:
6B6Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6B6Z entry

There are 4 chains in PDB entry 6B6Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 6	GLU 214
B	GLU 4	LYS 228
C	THR 6	GLY 213
D	GLU 4	PRO 227

There are 16 helices in PDB entry 6B6Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	80	84	Right-handed 310
Helix 2	AA2	A	122	128	Right-handed alpha
Helix 3	AA3	A	184	188	Right-handed alpha
Helix 4	AA4	B	31	35	Right-handed 310
Helix 5	AA5	B	65	68	Right-handed 310
Helix 6	AA6	B	90	94	Right-handed 310
Helix 7	AA7	B	170	172	Right-handed 310
Helix 8	AA8	B	201	204	Right-handed 310
Helix 9	AA9	B	215	218	Right-handed 310
Helix 10	AB1	C	80	84	Right-handed 310
Helix 11	AB2	C	122	128	Right-handed alpha
Helix 12	AB3	C	184	188	Right-handed alpha
Helix 13	AB4	D	90	94	Right-handed 310
Helix 14	AB5	D	170	172	Right-handed 310
Helix 15	AB6	D	201	203	Right-handed 310
Helix 16	AB7	D	215	218	Right-handed 310

There are 20 sheets in PDB entry 6B6Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	103	107	parallel
Strand 3	A	86	93	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	46	47	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	103	107	parallel
Strand 3	A	86	93	anti-parallel
Strand 4	A	96	99	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	68	first strand
Strand 2	A	71	76	anti-parallel
Strand 3	A	19	24	anti-parallel
Strand 4	C	154	157	parallel
Strand 5	C	145	151	anti-parallel
Strand 6	C	192	199	anti-parallel
Strand 7	C	206	211	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	119	first strand
Strand 2	A	130	140	anti-parallel
Strand 3	A	174	183	anti-parallel
Strand 4	A	160	164	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	211	first strand
Strand 2	A	192	199	anti-parallel
Strand 3	A	145	151	anti-parallel
Strand 4	A	154	157	anti-parallel
Strand 5	C	19	24	parallel
Strand 6	C	71	76	anti-parallel
Strand 7	C	63	68	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	10	first strand
Strand 2	B	21	28	anti-parallel
Strand 3	B	81	86	anti-parallel
Strand 4	B	71	76	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	15	first strand
Strand 2	B	121	125	parallel
Strand 3	B	95	103	anti-parallel
Strand 4	B	37	42	anti-parallel
Strand 5	B	48	54	anti-parallel
Strand 6	B	61	63	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	15	first strand
Strand 2	B	121	125	parallel
Strand 3	B	95	103	anti-parallel
Strand 4	B	113	117	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	138	first strand
Strand 2	B	149	159	anti-parallel
Strand 3	B	190	199	anti-parallel
Strand 4	B	177	179	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	138	first strand
Strand 2	B	149	159	anti-parallel
Strand 3	B	190	199	anti-parallel
Strand 4	B	183	184	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	168	first strand
Strand 2	B	209	214	anti-parallel
Strand 3	B	219	224	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	103	107	parallel
Strand 3	C	86	92	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	46	47	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	103	107	parallel
Strand 3	C	86	92	anti-parallel
Strand 4	C	97	99	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	119	first strand
Strand 2	C	130	140	anti-parallel
Strand 3	C	174	183	anti-parallel
Strand 4	C	160	164	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	10	first strand
Strand 2	D	21	28	anti-parallel
Strand 3	D	81	86	anti-parallel
Strand 4	D	71	76	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	121	125	parallel
Strand 3	D	95	103	anti-parallel
Strand 4	D	36	42	anti-parallel
Strand 5	D	48	54	anti-parallel
Strand 6	D	61	63	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	121	125	parallel
Strand 3	D	95	103	anti-parallel
Strand 4	D	113	117	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	138	first strand
Strand 2	D	149	159	anti-parallel
Strand 3	D	190	199	anti-parallel
Strand 4	D	177	179	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	146	first strand
Strand 2	D	149	159	anti-parallel
Strand 3	D	190	199	anti-parallel
Strand 4	D	183	184	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	168	first strand
Strand 2	D	209	214	anti-parallel
Strand 3	D	219	224	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6B6Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
6B6Z