Analysis of interatomic Contacts of Structural Units in PDB entry:
6B7M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B7M entry

There are 3 chains in PDB entry 6B7M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LEU 312
B
 MET 1GLY 76
C
 MET 1GLY 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6B7M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 21Right-handed alpha
Helix 2
AA2
A
30 34Right-handed 310
Helix 3
AA3
A
39 43Right-handed 310
Helix 4
AA4
A
66 68Right-handed 310
Helix 5
AA5
A
69 89Right-handed alpha
Helix 6
AA6
A
101 105Right-handed 310
Helix 7
AA7
A
106 119Right-handed alpha
Helix 8
AA8
A
130 153Right-handed alpha
Helix 9
AA9
A
158 171Right-handed alpha
Helix 10
AB1
A
180 194Right-handed alpha
Helix 11
AB2
A
195 197Right-handed 310
Helix 12
AB3
A
199 205Right-handed alpha
Helix 13
AB4
A
213 223Right-handed alpha
Helix 14
AB5
A
223 241Right-handed alpha
Helix 15
AB6
A
251 256Right-handed 310
Helix 16
AB7
A
259 271Right-handed alpha
Helix 17
AB8
A
281 290Right-handed alpha
Helix 18
AB9
A
291 301Right-handed alpha
Helix 19
AC1
B
22 35Right-handed alpha
Helix 20
AC2
B
37 41Right-handed 310
Helix 21
AC3
B
56 60Right-handed 310
Helix 22
AC4
C
22 35Right-handed alpha
Helix 23
AC5
C
37 39Right-handed 310
Helix 24
AC6
C
56 60Right-handed 310
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There are 4 sheets in PDB entry 6B7M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
61 64anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
274 275anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 7anti-parallel
Strand 3
B
66 70parallel
Strand 4
B
42 45anti-parallel
Strand 5
B
48 49anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
2 6anti-parallel
Strand 3
C
66 71parallel
Strand 4
C
41 45anti-parallel
Strand 5
C
48 49anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il