Analysis of interatomic Contacts of Structural Units in PDB entry:
6B88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B88 entry

There are 2 chains in PDB entry 6B88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 77HIS 323
B
 ARG 77HIS 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 4 helices in PDB entry 6B88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
246 250Right-handed 310
Helix 2
AA2
A
280 285Right-handed alpha
Helix 3
AA3
B
246 250Right-handed 310
Helix 4
AA4
B
280 285Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 6B88. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 85first strand
Strand 2
A
99 105anti-parallel
Strand 3
A
292 302anti-parallel
Strand 4
A
130 134anti-parallel
Strand 5
A
142 149anti-parallel
Strand 6
A
267 271anti-parallel
Strand 7
A
287 288anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 111first strand
Strand 2
A
118 122anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 167first strand
Strand 2
A
154 158anti-parallel
Strand 3
A
260 262anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
A
220 230anti-parallel
Strand 3
A
188 197anti-parallel
Strand 4
A
204 210anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
A
220 230anti-parallel
Strand 3
A
233 239anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 86first strand
Strand 2
B
99 105anti-parallel
Strand 3
B
292 302anti-parallel
Strand 4
B
130 134anti-parallel
Strand 5
B
142 149anti-parallel
Strand 6
B
267 271anti-parallel
Strand 7
B
287 288anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 111first strand
Strand 2
B
118 122anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 167first strand
Strand 2
B
154 158anti-parallel
Strand 3
B
260 262anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 184first strand
Strand 2
B
220 230anti-parallel
Strand 3
B
188 197anti-parallel
Strand 4
B
204 210anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 184first strand
Strand 2
B
220 230anti-parallel
Strand 3
B
233 239anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il