Analysis of interatomic Contacts of Structural Units in PDB entry:
6B8A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B8A entry

There are 2 chains in PDB entry 6B8A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 93LEU 295
B
 ASN 94LEU 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6B8A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
104 119Right-handed alpha
Helix 2
AA2
A
128 137Right-handed alpha
Helix 3
AA3
A
185 190Right-handed alpha
Helix 4
AA4
A
220 230Right-handed alpha
Helix 5
AA5
A
239 248Right-handed alpha
Helix 6
AA6
A
274 277Right-handed 310
Helix 7
AA7
A
278 295Right-handed alpha
Helix 8
AA8
B
104 120Right-handed alpha
Helix 9
AA9
B
131 138Right-handed alpha
Helix 10
AB1
B
139 142Right-handed 310
Helix 11
AB2
B
185 190Right-handed alpha
Helix 12
AB3
B
220 230Right-handed alpha
Helix 13
AB4
B
239 248Right-handed alpha
Helix 14
AB5
B
274 277Right-handed 310
Helix 15
AB6
B
278 295Right-handed alpha
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There are 6 sheets in PDB entry 6B8A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 127first strand
Strand 2
A
95 100parallel
Strand 3
A
145 148parallel
Strand 4
A
263 272anti-parallel
Strand 5
A
158 172anti-parallel
Strand 6
A
235 238anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 127first strand
Strand 2
A
95 100parallel
Strand 3
A
145 148parallel
Strand 4
A
263 272anti-parallel
Strand 5
A
158 172anti-parallel
Strand 6
A
252 253anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 197first strand
Strand 2
A
215 218parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 127first strand
Strand 2
B
95 100parallel
Strand 3
B
145 148parallel
Strand 4
B
263 272anti-parallel
Strand 5
B
158 172anti-parallel
Strand 6
B
235 238anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 127first strand
Strand 2
B
95 100parallel
Strand 3
B
145 148parallel
Strand 4
B
263 272anti-parallel
Strand 5
B
158 172anti-parallel
Strand 6
B
252 253anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 197first strand
Strand 2
B
215 218parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il